Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2585

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952 mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503292 to 503677 10953 mRNA_2586: 10954 - K05765 CFL cofilin, at 503771 to 504788 10954

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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502,309 - 0.1
502,316 + 0.6
502,317 + 0.1
502,379 + -0.4
502,392 - -0.8
502,460 + 0.4
502,559 + -0.5
502,662 - 1.8
502,722 + -1.5
502,840 - 1.3
502,840 - 1.1
502,840 - 1.6
502,844 - -0.5
503,258 - -1.9
503,276 + -2.3
503,402 - 10953 mRNA_2585 0.28 0.4
503,418 + 10953 mRNA_2585 0.33 -2.3
503,691 - -2.2
503,696 - 0.2