Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2584

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952 mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503292 to 503677 10953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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498,861 - 10951 mRNA_2583 0.87 1.7
498,918 + 10951 mRNA_2583 0.88 -2.7
499,013 + -0.5
499,320 + -0.2
499,323 - 2.1
499,471 + -0.7
499,479 - 1.2
499,635 - -2.2
499,639 + -0.0
499,751 - 0.5
499,757 - 0.7
499,760 - 0.6
499,773 - -0.6
499,778 + -1.3
499,778 + 0.2
499,885 - 1.2
499,942 - 10952 mRNA_2584 0.10 1.0
500,074 + 10952 mRNA_2584 0.15 -1.3
500,203 - 10952 mRNA_2584 0.19 -0.2
500,212 - 10952 mRNA_2584 0.20 0.6
500,227 + 10952 mRNA_2584 0.20 0.9
500,252 + 10952 mRNA_2584 0.21 0.0
500,322 + 10952 mRNA_2584 0.23 1.1
500,329 - 10952 mRNA_2584 0.24 -0.4
500,384 + 10952 mRNA_2584 0.25 0.5
500,397 - 10952 mRNA_2584 0.26 -0.5
500,402 - 10952 mRNA_2584 0.26 0.4
500,478 - 10952 mRNA_2584 0.29 1.0
500,617 + 10952 mRNA_2584 0.33 0.2
500,639 - 10952 mRNA_2584 0.34 -0.1
500,763 + 10952 mRNA_2584 0.38 0.7
500,850 - 10952 mRNA_2584 0.41 -2.4
500,914 + 10952 mRNA_2584 0.44 -1.4
500,918 - 10952 mRNA_2584 0.44 -1.6
500,994 + 10952 mRNA_2584 0.46 -0.8
501,095 - 10952 mRNA_2584 0.50 2.0
501,162 - 10952 mRNA_2584 0.52 0.8
501,562 + 10952 mRNA_2584 0.66 -1.1
501,599 + 10952 mRNA_2584 0.67 -0.3
501,674 + 10952 mRNA_2584 0.70 0.0
501,817 - 10952 mRNA_2584 0.75 1.8
501,817 - 10952 mRNA_2584 0.75 1.3
501,850 - 10952 mRNA_2584 0.76 1.2
501,857 - 10952 mRNA_2584 0.76 0.4
501,943 - 10952 mRNA_2584 0.79 -0.0
501,967 + 10952 mRNA_2584 0.80 0.7
502,129 + 10952 mRNA_2584 0.85 -1.8
502,132 - 10952 mRNA_2584 0.85 0.4
502,279 + -0.4
502,309 - 0.1
502,316 + 0.6
502,317 + 0.1
502,379 + -0.4
502,392 - -0.8
502,460 + 0.4
502,559 + -0.5
502,662 - 1.8
502,722 + -1.5
502,840 - 1.3
502,840 - 1.1
502,840 - 1.6
502,844 - -0.5
503,258 - -1.9
503,276 + -2.3
503,402 - 10953 mRNA_2585 0.28 0.4
503,418 + 10953 mRNA_2585 0.33 -2.3