Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2575

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477863 to 478879 10942 mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479011 to 480812 10943 mRNA_2576: 10944 - Hypothetical Protein, at 480885 to 482213 10944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,075 - 10942 mRNA_2574 0.21 -0.6
478,231 + 10942 mRNA_2574 0.36 0.4
478,239 - 10942 mRNA_2574 0.37 0.4
478,243 + 10942 mRNA_2574 0.37 -2.4
478,243 - 10942 mRNA_2574 0.37 -1.7
478,360 + 10942 mRNA_2574 0.49 0.1
478,396 + 10942 mRNA_2574 0.52 -1.9
478,809 - -0.1
478,826 - -0.8
478,828 + -2.1
479,074 - 0.2
479,107 + 0.9
479,116 - -1.5
479,120 - -0.4
479,121 - -0.8
479,238 + 10943 mRNA_2575 0.13 0.7
479,254 - 10943 mRNA_2575 0.13 0.6
479,367 - 10943 mRNA_2575 0.20 0.3
479,544 + 10943 mRNA_2575 0.30 -1.2
479,618 - 10943 mRNA_2575 0.34 0.0
479,981 - 10943 mRNA_2575 0.54 -0.6
480,011 + 10943 mRNA_2575 0.55 -1.2
480,273 - 10943 mRNA_2575 0.70 0.2
480,276 + 10943 mRNA_2575 0.70 1.1
480,418 - 10943 mRNA_2575 0.78 -2.6
480,431 - 10943 mRNA_2575 0.79 0.2
480,441 + 10943 mRNA_2575 0.79 -1.7
480,529 - 10943 mRNA_2575 0.84 -0.2
480,584 - 10943 mRNA_2575 0.87 -0.6
480,659 - -0.8
480,739 - 0.1
480,746 + -0.4
480,749 - 0.4
480,754 - 0.9
480,761 + 2.1
480,811 - 2.5
480,860 + -0.4
480,874 - 0.2
480,879 + -1.2
480,884 + -1.4
480,982 - 1.8
481,038 + 10944 mRNA_2576 0.12 0.6
481,041 + 10944 mRNA_2576 0.12 0.2
481,051 + 10944 mRNA_2576 0.12 -1.5
481,131 - 10944 mRNA_2576 0.19 -0.3
481,160 + 10944 mRNA_2576 0.21 -1.9
481,215 + 10944 mRNA_2576 0.25 -0.7
481,234 - 10944 mRNA_2576 0.26 -0.9
481,243 - 10944 mRNA_2576 0.27 -2.3
481,291 + 10944 mRNA_2576 0.31 1.1
481,298 - 10944 mRNA_2576 0.31 -0.5
481,336 + 10944 mRNA_2576 0.34 -0.8
481,527 - 10944 mRNA_2576 0.48 -1.8