Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2573

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472476 to 474035 10940 mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474232 to 477732 10941 mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477863 to 478879 10942

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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474,079 - -1.5
474,204 - 0.1
474,360 - 0.5
474,374 - 1.5
474,386 - -0.8
474,392 + -0.5
474,668 - 10941 mRNA_2573 0.12 1.5
474,788 + 10941 mRNA_2573 0.16 -0.8
474,791 - 10941 mRNA_2573 0.16 0.8
474,808 + 10941 mRNA_2573 0.16 -0.7
474,820 - 10941 mRNA_2573 0.17 0.3
474,836 + 10941 mRNA_2573 0.17 1.7
474,965 - 10941 mRNA_2573 0.21 -2.2
474,982 + 10941 mRNA_2573 0.21 0.6
474,983 + 10941 mRNA_2573 0.21 -2.3
475,118 - 10941 mRNA_2573 0.25 -0.9
475,124 + 10941 mRNA_2573 0.25 1.0
475,135 + 10941 mRNA_2573 0.26 -0.1
475,137 - 10941 mRNA_2573 0.26 1.9
475,139 + 10941 mRNA_2573 0.26 1.1
475,139 - 10941 mRNA_2573 0.26 -1.9
475,150 + 10941 mRNA_2573 0.26 1.1
475,178 + 10941 mRNA_2573 0.27 -0.1
475,253 - 10941 mRNA_2573 0.29 0.4
475,270 + 10941 mRNA_2573 0.30 -1.3
475,271 + 10941 mRNA_2573 0.30 0.7
475,287 + 10941 mRNA_2573 0.30 -0.3
475,417 + 10941 mRNA_2573 0.34 0.4
475,558 + 10941 mRNA_2573 0.38 -0.5
475,723 + 10941 mRNA_2573 0.43 0.9
475,861 + 10941 mRNA_2573 0.47 -1.7
476,123 - 10941 mRNA_2573 0.54 -1.1
476,194 + 10941 mRNA_2573 0.56 1.7
476,430 + 10941 mRNA_2573 0.63 -0.4
476,448 - 10941 mRNA_2573 0.63 0.3
476,460 + 10941 mRNA_2573 0.64 1.1
476,478 + 10941 mRNA_2573 0.64 2.1
476,652 + 10941 mRNA_2573 0.69 -1.4
476,925 + 10941 mRNA_2573 0.77 -1.3
477,467 - -1.1
477,479 + -0.9
477,770 - -0.5
477,793 + 0.3
477,795 + 0.3
477,795 + -1.4
477,810 - 1.2
477,881 - 2.4
477,939 + 1.2
477,966 - 10942 mRNA_2574 0.10 -0.0
478,008 + 10942 mRNA_2574 0.14 -1.0
478,075 - 10942 mRNA_2574 0.21 -0.6
478,231 + 10942 mRNA_2574 0.36 0.4
478,239 - 10942 mRNA_2574 0.37 0.4
478,243 + 10942 mRNA_2574 0.37 -2.4
478,243 - 10942 mRNA_2574 0.37 -1.7
478,360 + 10942 mRNA_2574 0.49 0.1
478,396 + 10942 mRNA_2574 0.52 -1.9