Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2536

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902 mRNA_2535: 10903 - Hypothetical Protein, at 387572 to 388066 10903 mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388426 to 391874 10904 mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392613 to 393652 10905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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387,462 + 0.2
387,470 - -0.3
387,479 + 0.1
387,484 + -1.1
387,492 - 0.8
387,608 + 2.9
387,611 - 0.3
387,615 + -0.3
387,623 - 10903 mRNA_2535 0.10 0.2
387,628 + 10903 mRNA_2535 0.11 1.5
387,630 - 10903 mRNA_2535 0.12 -1.5
387,637 + 10903 mRNA_2535 0.13 1.8
387,637 - 10903 mRNA_2535 0.13 1.7
387,638 - 10903 mRNA_2535 0.13 -2.0
387,639 + 10903 mRNA_2535 0.14 1.8
387,641 + 10903 mRNA_2535 0.14 -0.7
387,641 - 10903 mRNA_2535 0.14 -0.6
387,642 - 10903 mRNA_2535 0.14 1.4
387,643 + 10903 mRNA_2535 0.14 0.1
387,643 - 10903 mRNA_2535 0.14 0.2
387,644 + 10903 mRNA_2535 0.15 -1.4
387,644 + 10903 mRNA_2535 0.15 -0.8
387,644 + 10903 mRNA_2535 0.15 -0.5
387,644 + 10903 mRNA_2535 0.15 -0.3
387,648 + 10903 mRNA_2535 0.15 0.4
387,649 - 10903 mRNA_2535 0.16 0.2
387,650 - 10903 mRNA_2535 0.16 1.3
387,652 + 10903 mRNA_2535 0.16 -1.2
387,656 + 10903 mRNA_2535 0.17 -1.2
387,658 - 10903 mRNA_2535 0.17 1.2
387,659 + 10903 mRNA_2535 0.18 1.0
387,665 - 10903 mRNA_2535 0.19 0.5
387,670 - 10903 mRNA_2535 0.20 -1.3
387,671 - 10903 mRNA_2535 0.20 -1.2
387,673 + 10903 mRNA_2535 0.20 -0.0
387,675 - 10903 mRNA_2535 0.21 1.2
387,677 - 10903 mRNA_2535 0.21 -1.2
387,677 - 10903 mRNA_2535 0.21 1.7
387,678 + 10903 mRNA_2535 0.21 0.4
387,678 + 10903 mRNA_2535 0.21 -0.9
387,678 + 10903 mRNA_2535 0.21 1.9
387,684 - 10903 mRNA_2535 0.23 -1.8
387,686 + 10903 mRNA_2535 0.23 0.1
387,689 + 10903 mRNA_2535 0.24 1.3
387,695 - 10903 mRNA_2535 0.25 0.4
387,698 + 10903 mRNA_2535 0.25 0.6
387,698 - 10903 mRNA_2535 0.25 0.1
387,719 + 10903 mRNA_2535 0.30 0.3
387,721 + 10903 mRNA_2535 0.30 -0.5
387,733 + 10903 mRNA_2535 0.33 1.3
387,749 + 10903 mRNA_2535 0.36 0.5
387,756 - 10903 mRNA_2535 0.37 0.8
387,765 - 10903 mRNA_2535 0.39 -0.5
387,783 - 10903 mRNA_2535 0.43 1.3
387,792 + 10903 mRNA_2535 0.44 -0.4
387,812 + 10903 mRNA_2535 0.48 -0.8
387,819 - 10903 mRNA_2535 0.50 1.2
387,829 - 10903 mRNA_2535 0.52 0.9
387,830 - 10903 mRNA_2535 0.52 0.3
387,832 + 10903 mRNA_2535 0.53 -1.1
387,839 + 10903 mRNA_2535 0.54 -2.4
387,846 + 10903 mRNA_2535 0.55 1.8
387,857 - 10903 mRNA_2535 0.58 -1.5
387,857 - 10903 mRNA_2535 0.58 0.1
387,858 - 10903 mRNA_2535 0.58 -1.9
387,873 + 10903 mRNA_2535 0.61 -0.0
387,874 - 10903 mRNA_2535 0.61 -0.1
387,877 - 10903 mRNA_2535 0.62 0.2
387,880 + 10903 mRNA_2535 0.62 -0.1
387,881 + 10903 mRNA_2535 0.62 1.6
387,882 + 10903 mRNA_2535 0.63 -0.0
387,885 + 10903 mRNA_2535 0.63 -0.4
387,897 - 10903 mRNA_2535 0.66 -1.8
387,901 + 10903 mRNA_2535 0.66 -0.5
387,901 - 10903 mRNA_2535 0.66 0.9
387,902 + 10903 mRNA_2535 0.67 1.0
387,915 + 10903 mRNA_2535 0.69 2.3
387,945 + 10903 mRNA_2535 0.75 0.5
388,010 + 10903 mRNA_2535 0.88 -0.7
388,022 + 0.9
388,035 + 0.8
388,037 - -1.5
388,041 - -0.9
388,052 - 0.4
388,056 - -0.8
388,060 + 0.2
388,062 - 0.2
388,062 + 0.3
388,062 - 1.5
388,093 + 0.7
388,186 - 0.2
388,210 + 1.9
388,215 + -0.2
388,229 + -2.4
388,246 + 1.0
388,259 - -1.2
388,278 - 1.5
388,318 - 0.9
388,351 - 0.8
388,360 + 1.0
388,360 + -0.2
388,363 - -0.3
388,368 + -2.4
388,369 - 0.3
388,650 + 1.3
389,028 + 10904 mRNA_2536 0.17 3.1
389,228 - 10904 mRNA_2536 0.23 0.4
389,314 + 10904 mRNA_2536 0.26 -0.8
389,432 - 10904 mRNA_2536 0.29 1.9
389,673 - 10904 mRNA_2536 0.36 -1.6
390,410 + 10904 mRNA_2536 0.58 0.7
390,610 + 10904 mRNA_2536 0.63 -0.0
390,846 + 10904 mRNA_2536 0.70 -0.3
391,689 - 0.2
391,689 - 0.1
391,820 + 0.5
391,966 - -0.5
392,237 + 0.2
392,259 - 0.1
392,261 + -0.3
392,284 - 1.6
392,379 + 0.8
392,402 - -0.9