Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2426

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91083 to 92591 10793 mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92965 to 95698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96248 to 96907 10795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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92,662 - 1.2
92,662 - 0.9
92,667 + -0.6
92,681 + 3.3
92,783 - 0.5
92,788 - -0.9
92,828 - -0.1
92,985 + 2.4
93,022 + 1.0
93,118 - 1.6
93,523 + 10794 mRNA_2426 0.20 -0.7
93,553 + 10794 mRNA_2426 0.22 0.3
93,680 + 10794 mRNA_2426 0.26 -0.7
93,708 - 10794 mRNA_2426 0.27 0.9
93,774 + 10794 mRNA_2426 0.30 -0.8
93,800 + 10794 mRNA_2426 0.31 0.6
94,789 + 10794 mRNA_2426 0.67 -0.5
94,905 + 10794 mRNA_2426 0.71 1.2
95,274 - 10794 mRNA_2426 0.84 0.6
95,336 - 10794 mRNA_2426 0.87 -1.0
95,671 - -0.2
95,787 - -0.4
95,806 + 0.5
95,828 + -0.6
95,971 - 1.4
95,971 + -0.6
96,107 + 0.3
96,148 - 0.9
96,152 - 0.5
96,247 - 0.1
96,267 - -0.7
96,272 + -1.6
96,278 + 0.4
96,280 - 0.5
96,286 - 1.1
96,299 - 0.4
96,308 - 0.3
96,317 - 10795 mRNA_2427 0.10 -1.0
96,328 + 10795 mRNA_2427 0.12 -0.6
96,412 + 10795 mRNA_2427 0.25 -0.7
96,423 - 10795 mRNA_2427 0.27 2.6
96,453 + 10795 mRNA_2427 0.31 0.0
96,513 - 10795 mRNA_2427 0.40 0.2
96,535 + 10795 mRNA_2427 0.43 1.4
96,543 - 10795 mRNA_2427 0.45 0.0
96,547 - 10795 mRNA_2427 0.45 0.3
96,548 + 10795 mRNA_2427 0.45 -0.3
96,566 + 10795 mRNA_2427 0.48 1.3
96,575 + 10795 mRNA_2427 0.50 0.4
96,583 - 10795 mRNA_2427 0.51 0.7
96,583 + 10795 mRNA_2427 0.51 -0.9
96,584 + 10795 mRNA_2427 0.51 -0.9
96,586 + 10795 mRNA_2427 0.51 0.8
96,634 + 10795 mRNA_2427 0.58 -1.3
96,691 - 10795 mRNA_2427 0.67 -0.8