Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2422

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82479 to 84495 10789 mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84636 to 85865 10790 mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86088 to 89055 10791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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83,695 + 10789 mRNA_2421 0.60 0.5
84,122 - 10789 mRNA_2421 0.81 0.0
84,122 - 10789 mRNA_2421 0.81 1.0
84,129 + 10789 mRNA_2421 0.82 -0.8
84,129 + 10789 mRNA_2421 0.82 -0.0
84,375 - 1.1
84,376 - -0.5
84,835 + 10790 mRNA_2422 0.16 1.4
84,838 - 10790 mRNA_2422 0.16 0.9
84,839 + 10790 mRNA_2422 0.17 0.7
84,848 - 10790 mRNA_2422 0.17 -0.2
84,872 - 10790 mRNA_2422 0.19 -2.1
84,894 - 10790 mRNA_2422 0.21 -0.7
85,177 - 10790 mRNA_2422 0.44 0.4
85,193 + 10790 mRNA_2422 0.45 1.2
85,195 - 10790 mRNA_2422 0.45 -1.6
85,601 - 10790 mRNA_2422 0.78 -0.0
85,909 - -1.1
86,028 + 0.4
86,072 - 0.1
86,164 - 0.1
86,236 - -2.5
86,239 - 0.3
86,338 - -3.9
86,378 + 0.3
86,519 - 10791 mRNA_2423 0.15 0.1
86,622 + 10791 mRNA_2423 0.18 -0.5
86,657 + 10791 mRNA_2423 0.19 2.1
86,751 - 10791 mRNA_2423 0.22 -0.8