Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2408

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53086 to 55006 10775 mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55235 to 56824 10776 mRNA_2409: 10777 - Hypothetical Protein, at 56909 to 58334 10777

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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54,324 - 10775 mRNA_2407 0.64 -1.4
55,274 - 0.5
55,304 + -0.0
55,597 - 10776 mRNA_2408 0.23 -1.0
55,740 + 10776 mRNA_2408 0.32 0.0
56,154 + 10776 mRNA_2408 0.58 2.8
56,323 + 10776 mRNA_2408 0.68 -0.6
56,374 - 10776 mRNA_2408 0.72 1.4
56,393 + 10776 mRNA_2408 0.73 -0.7
56,410 - 10776 mRNA_2408 0.74 0.6
56,503 + 10776 mRNA_2408 0.80 0.6
56,511 - 10776 mRNA_2408 0.80 -1.8
56,652 - 10776 mRNA_2408 0.89 -0.5
56,763 + 0.5
56,764 + 1.8
56,792 - 0.1
56,927 - 0.8
56,941 - -1.0
56,953 + 1.9
57,091 + 10777 mRNA_2409 0.13 0.3
57,101 + 10777 mRNA_2409 0.13 1.8
57,130 - 10777 mRNA_2409 0.15 0.5
57,384 + 10777 mRNA_2409 0.33 -1.4
57,701 + 10777 mRNA_2409 0.56 1.1