Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2389

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2388: 10756 - K14781 DHR2 ATP-dependent RNA helicase DHR2, at 595 to 3686 10756 mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4587 to 7344 10757 mRNA_2390: 10758 - Hypothetical Protein, at 8054 to 9276 10758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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3,782 + -0.3
3,821 + 0.9
4,050 - 1.4
4,089 - 0.7
4,160 + 0.4
4,163 - -1.3
4,185 + 0.6
4,250 - -1.7
4,312 + -0.8
4,543 - 1.6
4,544 + 1.8
4,693 + 1.5
4,810 + -1.0
4,816 + -0.4
4,819 - 0.6
4,819 - 0.2
4,879 - 10757 mRNA_2389 0.11 2.1
4,889 + 10757 mRNA_2389 0.11 0.5
5,047 + 10757 mRNA_2389 0.17 -0.5
5,047 + 10757 mRNA_2389 0.17 2.3
5,075 + 10757 mRNA_2389 0.18 0.1
5,231 - 10757 mRNA_2389 0.23 -2.0
5,267 + 10757 mRNA_2389 0.25 1.7
5,306 - 10757 mRNA_2389 0.26 -1.2
5,336 - 10757 mRNA_2389 0.27 0.2
5,390 + 10757 mRNA_2389 0.29 -0.7
5,391 - 10757 mRNA_2389 0.29 -3.1
5,432 + 10757 mRNA_2389 0.31 -0.2
5,488 - 10757 mRNA_2389 0.33 0.5
5,494 + 10757 mRNA_2389 0.33 1.5
5,510 - 10757 mRNA_2389 0.33 0.2
5,519 + 10757 mRNA_2389 0.34 -0.1
5,561 - 10757 mRNA_2389 0.35 -0.4
5,666 - 10757 mRNA_2389 0.39 1.8
5,920 - 10757 mRNA_2389 0.48 0.3
5,952 + 10757 mRNA_2389 0.49 0.9
5,990 + 10757 mRNA_2389 0.51 -0.9
6,227 + 10757 mRNA_2389 0.59 -2.6
6,238 - 10757 mRNA_2389 0.60 -2.4
6,249 + 10757 mRNA_2389 0.60 0.2
6,388 + 10757 mRNA_2389 0.65 -0.3
6,419 + 10757 mRNA_2389 0.66 0.7
6,546 - 10757 mRNA_2389 0.71 -1.0
6,553 + 10757 mRNA_2389 0.71 0.9
6,660 + 10757 mRNA_2389 0.75 0.6
6,713 + 10757 mRNA_2389 0.77 -0.0
6,938 - 10757 mRNA_2389 0.85 -1.8
6,962 + 10757 mRNA_2389 0.86 0.7
7,171 - 2.4
7,187 - 1.8
7,191 + -1.7
7,214 + 1.9
7,310 + 1.6
7,337 + -0.3
7,360 + 0.1
7,820 - -1.0