Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2353

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688827 to 689561 10720 mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689972 to 692124 10721 mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692257 to 694787 10722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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689,196 - 10720 mRNA_2352 0.50 -1.2
689,352 - 10720 mRNA_2352 0.71 1.9
689,489 - -0.5
689,514 - 0.9
689,515 - 0.1
689,782 + -1.5
689,785 - 0.6
689,798 - -1.4
689,802 - 0.1
690,248 + 10721 mRNA_2353 0.13 0.7
690,260 + 10721 mRNA_2353 0.13 -1.5
690,676 + 10721 mRNA_2353 0.33 0.2
690,711 - 10721 mRNA_2353 0.34 0.1
690,837 + 10721 mRNA_2353 0.40 -0.4
690,967 + 10721 mRNA_2353 0.46 0.2
691,276 + 10721 mRNA_2353 0.61 -2.8
691,690 - 10721 mRNA_2353 0.80 -1.2
691,701 + 10721 mRNA_2353 0.80 0.3
691,842 - 10721 mRNA_2353 0.87 0.1
691,961 + 2.6
691,997 - 0.6
692,138 + 1.4
692,142 - -0.2
692,257 - 1.5
692,258 - 0.1
692,260 - -0.2
692,302 + -0.3
692,306 + -0.4
692,311 + -0.5
692,320 + -0.3
692,320 - 0.5
692,334 + 0.8
692,461 + -0.8
692,463 + -1.5
692,463 + -0.8
692,469 - -0.5
692,483 - 0.3
692,493 - -1.6
692,500 + -0.8
692,772 - 10722 mRNA_2354 0.20 0.3
693,084 + 10722 mRNA_2354 0.33 0.2