Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2345

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2344: 10712 - Hypothetical Protein, at 671205 to 671888 10712 mRNA_2345: 10713 - KOG1399 Flavin-containing monooxygenase, at 672144 to 674998 10713 mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675723 to 677238 10714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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671,166 + 0.3
671,171 + 0.6
671,242 - 0.2
671,344 - 10712 mRNA_2344 0.20 -1.0
671,589 + 10712 mRNA_2344 0.56 -0.8
671,636 - 10712 mRNA_2344 0.63 1.0
671,648 + 10712 mRNA_2344 0.65 1.2
671,669 - 10712 mRNA_2344 0.68 -0.9
671,686 - 10712 mRNA_2344 0.70 -0.6
671,697 - 10712 mRNA_2344 0.72 -3.0
671,711 + 10712 mRNA_2344 0.74 -0.2
671,799 - 10712 mRNA_2344 0.87 -0.0
671,818 - 10712 mRNA_2344 0.90 -0.5
671,820 + -0.2
671,827 + 0.6
671,829 + -0.2
671,854 - 1.3
671,878 - 0.2
671,928 - 0.4
671,941 + 0.6
671,952 - -0.6
671,980 - 0.5
672,000 + 0.9
672,010 + -0.6
672,022 + -0.3
672,035 - -0.9
672,038 - -0.9
672,043 + -0.6
672,050 + -0.0
672,065 - 1.8
672,086 + 0.0
672,260 + -0.2
672,372 - -0.7
672,968 + 10713 mRNA_2345 0.29 -0.0
673,249 + 10713 mRNA_2345 0.39 0.2
673,290 + 10713 mRNA_2345 0.40 0.6
673,382 - 10713 mRNA_2345 0.43 1.6
673,554 - 10713 mRNA_2345 0.49 -0.0
674,131 + 10713 mRNA_2345 0.70 0.1
674,352 + 10713 mRNA_2345 0.77 -0.9
674,534 + 10713 mRNA_2345 0.84 1.3
674,715 + -0.4
675,136 + -0.0
675,291 + -0.4
675,617 - 2.8