Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2338

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705 mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657491 to 659083 10706 mRNA_2339: 10707 - SUPERFAMILY--SSF55298, at 659249 to 660620 10707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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656,589 + 0.5
656,589 - -1.2
656,591 - -1.8
656,606 + -0.2
656,612 + -0.9
656,626 + 1.6
656,629 - -0.0
656,629 + -0.4
656,637 - -0.6
656,663 + 0.8
656,672 + 0.7
656,672 - 0.1
656,679 - 0.0
656,682 + -2.3
656,688 + -0.8
656,724 + 1.4
656,742 + 1.1
656,755 - -0.0
656,778 - 0.2
656,791 - 2.0
656,816 - 1.0
656,816 - -0.1
656,832 + -0.7
656,856 - 0.6
656,890 - 0.7
656,899 - 0.5
656,901 - -2.4
656,921 - 0.1
656,923 - -0.5
656,923 - -1.8
656,925 - -0.3
656,930 - 0.2
656,945 + -2.6
656,960 + 1.4
656,960 - -0.4
656,961 + -0.2
656,978 + 0.8
656,978 - -0.8
656,980 - -0.2
656,987 - -0.1
656,990 + 0.4
656,992 - 0.2
656,997 - 0.0
657,029 - -0.5
657,039 + 0.3
657,067 - 0.3
657,077 + -0.6
657,085 + 0.0
657,088 - 1.0
657,123 - 0.0
657,132 + 0.3
657,157 + 1.9
657,164 + 0.3
657,165 - 0.1
657,174 - 0.4
657,175 + 0.7
657,183 + 1.7
657,191 - -0.2
657,204 + 0.2
657,216 - -2.3
657,227 + 0.1
657,234 - -0.7
657,243 - 1.3
657,244 - -1.5
657,246 - 1.1
657,257 + -2.1
657,260 - -2.7
657,265 + 0.9
657,270 - -0.9
657,284 + 0.0
657,292 + -0.3
657,292 + 0.4
657,299 + -2.0
657,308 + 0.3
657,318 + -1.1
657,324 + 1.8
657,325 - 1.1
657,335 + -0.8
657,335 - 0.3
657,421 - 0.8
657,438 - 1.7
657,451 - 2.2
657,463 + -1.1
657,463 + -0.6
657,467 + 0.9
657,584 - -0.7
657,590 - -2.3
657,637 + -1.8
657,641 - -0.0
657,733 - 10706 mRNA_2338 0.15 -0.1
657,789 - 10706 mRNA_2338 0.19 -0.4
659,217 - -0.3
659,711 + 10707 mRNA_2339 0.34 -0.7