Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2299

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555441 to 556485 10666 mRNA_2299: 10667 - Hypothetical Protein, at 557055 to 559337 10667 mRNA_2300: 10668 - Hypothetical Protein, at 559511 to 559996 10668 mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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556,541 + 0.1
556,659 + -2.0
556,673 - -2.3
556,700 - -0.8
556,852 - 0.4
556,926 - -0.6
556,944 + -1.6
557,102 - 1.8
557,475 + 10667 mRNA_2299 0.18 0.1
557,978 - 10667 mRNA_2299 0.40 0.3
558,280 + 10667 mRNA_2299 0.54 1.7
558,835 - 10667 mRNA_2299 0.78 -0.1
558,843 - 10667 mRNA_2299 0.78 0.8
559,141 + -1.5
559,143 - -1.1
559,301 - -0.3
559,407 - -0.1
559,427 + 1.2
559,440 - 0.9
559,446 - 1.0
559,600 + 10668 mRNA_2300 0.18 -0.5
559,618 + 10668 mRNA_2300 0.22 -2.2
559,637 + 10668 mRNA_2300 0.26 0.1
559,743 + 10668 mRNA_2300 0.48 -0.9
559,772 - 10668 mRNA_2300 0.54 -0.4
559,806 + 10668 mRNA_2300 0.61 -0.0
559,869 - 10668 mRNA_2300 0.74 -0.6
559,885 - 10668 mRNA_2300 0.77 0.3
559,895 - 10668 mRNA_2300 0.79 1.0
559,901 + 10668 mRNA_2300 0.80 -0.2
559,931 + 10668 mRNA_2300 0.86 0.0
559,936 + 10668 mRNA_2300 0.87 0.1
559,936 + 10668 mRNA_2300 0.87 1.4
559,936 - 10668 mRNA_2300 0.87 1.9
559,952 - -0.6
559,958 - 0.3
559,977 + -1.4
560,041 + 0.4
560,066 - -0.4
560,093 + -2.3
560,149 - 0.2
560,156 + -0.2
560,158 + 1.4
560,178 + 0.8
560,247 + 0.4