Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2291

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2291: 10659 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 540927 to 542780 10659 mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543301 to 545980 10660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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540,336 - -0.5
540,624 + 2.2
540,630 + 1.4
540,657 + 0.1
540,764 - -1.6
540,791 - -0.1
540,812 + -0.9
540,820 + -0.7
540,829 + 0.1
540,925 - 0.4
540,947 + 0.2
540,952 + 0.7
540,962 + 0.6
540,965 + 2.0
541,369 + 10659 mRNA_2291 0.24 1.2
541,675 - 10659 mRNA_2291 0.40 1.0
541,952 - 10659 mRNA_2291 0.55 1.3
542,671 + 0.1
542,699 + 0.3
542,811 + -0.6
542,816 - -0.2
542,823 - -0.7
542,829 + 0.5
542,829 + -0.5
542,982 - -0.3
543,041 + -0.0
543,189 - -0.3
543,199 + 0.4
543,307 - 1.3
543,310 - 2.6
543,351 + 1.0
543,414 + 2.5
543,507 + 0.8
543,625 + 10660 mRNA_2292 0.12 0.4
543,667 + 10660 mRNA_2292 0.14 0.8