Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2282

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519083 to 521393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522236 to 522967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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521,269 + 0.0
521,291 + -1.4
521,326 + 1.2
521,403 - 0.6
521,410 + -1.3
521,561 - -0.4
521,564 - -0.5
521,567 - -0.6
521,568 + 0.4
521,568 + 0.0
521,569 - -1.1
521,569 + -1.5
521,603 - -1.1
521,621 - -0.2
521,627 - 0.2
521,643 + -0.3
521,655 - -1.0
521,657 + 0.5
521,701 + 0.7
521,703 - 0.5
521,713 + 0.2
521,720 - -1.0
521,865 + 0.7
521,914 + -0.0
522,015 + 0.1
522,045 + -1.2
522,494 + 10650 mRNA_2282 0.35 -1.3
522,808 - 10650 mRNA_2282 0.78 2.4
522,956 - -1.0
523,083 + 1.0
523,242 + 0.5
523,287 - -0.2
523,370 + -0.4
523,659 - 0.5
523,959 - -1.0