Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2267

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2265: 10633 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 486068 to 487753 10633 mRNA_2266: 10634 - Hypothetical Protein, at 487843 to 488421 10634 mRNA_2267: 10635 - K15110 SLC25A21, ODC solute carrier family 25 (mitochondrial 2-oxodicarboxylate transporter), member 21, at 488523 to 490039 10635 mRNA_2268: 10636 - K11215 STE12 transcription factor STE12, at 490121 to 491043 10636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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488,426 - 0.5
488,426 - -1.0
488,429 - -1.2
488,433 - -0.1
488,435 - 0.6
488,448 - 0.3
488,453 + 1.1
488,460 - 1.8
488,461 - 0.7
488,463 + 0.4
488,465 + 1.9
488,474 - 1.4
488,483 + 0.1
488,608 + 0.6
488,612 - 0.7
488,624 + -2.2
488,761 + 10635 mRNA_2267 0.16 1.3
488,762 + 10635 mRNA_2267 0.16 1.8
488,762 + 10635 mRNA_2267 0.16 1.4
488,775 + 10635 mRNA_2267 0.17 -1.1
488,904 - 10635 mRNA_2267 0.25 0.4
488,940 - 10635 mRNA_2267 0.27 -0.5
489,078 + 10635 mRNA_2267 0.37 1.5
489,495 - 10635 mRNA_2267 0.64 -1.7
489,666 + 10635 mRNA_2267 0.75 -0.7
489,879 - 10635 mRNA_2267 0.89 1.0
490,072 + 1.6
490,197 + -0.5
490,208 - -0.1
490,361 - 10636 mRNA_2268 0.26 1.8
490,362 + 10636 mRNA_2268 0.26 -1.0
490,517 - 10636 mRNA_2268 0.43 -0.7
490,649 - 10636 mRNA_2268 0.57 -0.3
490,658 + 10636 mRNA_2268 0.58 0.2
490,790 - 10636 mRNA_2268 0.72 -2.1
490,798 - 10636 mRNA_2268 0.73 0.4
490,850 - 10636 mRNA_2268 0.79 -0.9
490,932 + 10636 mRNA_2268 0.88 1.1
490,944 - 10636 mRNA_2268 0.89 0.5
490,952 - -1.3
490,965 + 0.8