Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2247

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2246: 10614 - K00026 MDH2 malate dehydrogenase, at 457247 to 458914 10614 mRNA_2247: 10615 - Hypothetical Protein, at 459109 to 460029 10615 mRNA_2248: 10616 - K01338 lon ATP-dependent Lon protease, at 460381 to 463216 10616

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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458,203 - 10614 mRNA_2246 0.57 -1.2
458,210 + 10614 mRNA_2246 0.58 0.8
458,365 + 10614 mRNA_2246 0.67 1.6
458,367 + 10614 mRNA_2246 0.67 -0.1
458,495 + 10614 mRNA_2246 0.75 -0.9
458,638 - 10614 mRNA_2246 0.83 0.7
458,654 + 10614 mRNA_2246 0.84 -0.1
458,762 - -0.6
458,791 - -2.2
458,930 - 0.2
459,078 - -0.5
459,085 - 0.1
459,088 - -2.0
459,089 + -0.5
459,092 + -1.8
459,095 - -1.7
459,108 + 0.3
459,200 + -0.5
459,202 - 10615 mRNA_2247 0.10 -0.7
459,210 - 10615 mRNA_2247 0.11 0.0
459,217 - 10615 mRNA_2247 0.12 0.4
459,224 - 10615 mRNA_2247 0.12 -0.1
459,233 + 10615 mRNA_2247 0.13 -1.6
459,242 + 10615 mRNA_2247 0.14 0.2
459,251 + 10615 mRNA_2247 0.15 0.3
459,384 - 10615 mRNA_2247 0.30 0.9
459,392 - 10615 mRNA_2247 0.31 0.3
459,401 - 10615 mRNA_2247 0.32 0.2
459,573 + 10615 mRNA_2247 0.50 0.9
459,708 - 10615 mRNA_2247 0.65 -0.5
459,723 + 10615 mRNA_2247 0.67 0.1
459,772 - 10615 mRNA_2247 0.72 -0.8
460,165 + -0.6
460,424 - -1.5
460,578 + 0.2
460,876 + 10616 mRNA_2248 0.17 -0.7