Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2244

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450168 to 452098 10611 mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452902 to 454246 10612 mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455190 to 456884 10613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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452,007 - -0.0
452,021 - 2.5
452,036 + 2.6
452,182 - -3.1
452,193 + -0.8
452,201 + -1.2
452,214 + -0.9
452,217 + 1.4
452,220 + 0.1
452,222 + 0.4
452,226 - 1.1
452,231 + 0.4
452,241 + 0.9
452,245 + 0.4
452,264 - 0.4
452,283 - 1.4
452,286 + 2.5
452,288 + -1.0
452,294 - 1.0
452,295 + -0.4
452,298 - -2.4
452,313 - 0.6
452,339 + 0.3
452,350 - 2.0
452,359 + 0.5
452,362 + 0.3
452,372 - -0.5
452,385 - 0.3
452,388 - -0.0
452,400 + 1.5
452,409 + -0.6
452,410 - -0.4
452,415 - -1.3
452,432 - 1.4
452,441 - -0.4
452,443 + -0.4
452,445 + -0.4
452,453 - -3.2
452,458 - -0.3
452,458 - -1.0
452,460 - -1.9
452,461 - -0.2
452,475 + 1.3
452,480 + -0.7
452,480 + 1.1
452,488 - -0.2
452,490 - -0.4
452,490 - 1.8
452,495 + -2.2
452,499 + 0.4
452,499 + -0.4
452,500 + 2.5
452,503 - -0.4
452,506 - 0.4
452,506 - -0.1
452,522 - -0.5
452,522 - 1.2
452,522 - 0.8
452,540 - -0.9
452,559 + -1.1
452,578 + 1.0
452,605 + 1.4
452,623 - 1.1
452,631 + -0.7
452,631 - -0.9
452,635 + 0.0
452,649 + -0.2
452,666 - 0.2
452,773 - -2.8
452,782 + 1.0
452,798 + -3.7
452,811 + -0.1
452,917 - -0.0
452,928 + -1.2
453,205 - 10612 mRNA_2244 0.23 -0.4
453,220 + 10612 mRNA_2244 0.24 -2.5
453,643 - 10612 mRNA_2244 0.55 -0.4
454,227 - 0.4
454,238 - -0.3
454,238 - 0.2
454,356 - -0.0
454,399 + 0.4
454,501 - 1.1
454,509 + 0.4
454,787 - -1.7
454,787 - 0.0
454,798 + 0.6
454,804 - -1.0
454,812 + 1.2
454,814 - -3.1
454,814 - -2.2
454,838 - -0.6
454,838 - -0.2
454,838 - -0.5
454,846 + 0.9
454,852 - -0.3
454,873 + -1.4
454,874 - -0.8
454,876 + -0.9
454,877 + -0.1
454,879 + -1.0
454,916 - 0.5
454,932 - 0.2
454,933 + -0.8
454,933 + 1.1
454,937 + 0.5
454,937 + 0.3
454,939 + 0.5
454,939 - -1.2
454,939 - 0.1
454,939 + -0.3
454,940 - -1.2
454,947 + -1.0
454,948 + -2.2
454,949 + -1.1
454,950 + -0.7
454,951 - -0.0
454,958 - -0.6
454,969 + 0.2
454,973 + 1.8
454,984 - 0.7
454,984 - 0.1
455,081 - 0.5
455,086 + -0.2
455,088 - -0.0
455,104 - -1.4
455,104 - -0.5
455,104 - -0.3
455,106 - 0.3
455,116 - -0.6
455,122 + -1.7
455,123 + -1.8
455,123 - 0.1
455,123 + -0.0
455,124 + -0.2