Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2242

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448063 to 449685 10610 mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450168 to 452098 10611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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447,221 - 10609 mRNA_2241 0.88 0.4
447,245 - 10609 mRNA_2241 0.89 0.7
447,345 - 0.0
447,532 - -0.2
447,548 - -3.1
447,585 + 0.9
447,666 + 0.8
447,666 + 0.2
447,667 - 0.4
447,669 + 1.0
447,671 - -0.1
447,683 - 0.6
447,689 - 0.3
447,800 + -0.4
447,808 + 0.1
447,811 - -0.2
447,840 - -1.4
447,884 + -2.2
447,892 + 0.7
447,928 + -0.4
448,015 - 0.1
448,031 - 0.3
448,043 - -0.2
448,044 + 0.2
448,044 - -1.2
448,053 - -1.8
448,073 + 2.1
448,183 + 0.6
448,184 + -0.2
448,210 + 0.8
448,217 + 1.0
448,240 - 10610 mRNA_2242 0.11 0.6
448,247 - 10610 mRNA_2242 0.11 -0.5
448,329 - 10610 mRNA_2242 0.16 0.7
448,335 + 10610 mRNA_2242 0.17 0.4
448,339 - 10610 mRNA_2242 0.17 1.4
448,353 + 10610 mRNA_2242 0.18 0.7
448,353 + 10610 mRNA_2242 0.18 -0.8
448,358 - 10610 mRNA_2242 0.18 -0.3
448,364 - 10610 mRNA_2242 0.19 1.8
448,384 + 10610 mRNA_2242 0.20 2.8
448,403 - 10610 mRNA_2242 0.21 -0.2
448,446 + 10610 mRNA_2242 0.24 0.1
448,478 + 10610 mRNA_2242 0.26 -0.2
448,483 - 10610 mRNA_2242 0.26 -0.0
448,494 + 10610 mRNA_2242 0.27 -0.6
448,497 - 10610 mRNA_2242 0.27 -2.6
448,502 + 10610 mRNA_2242 0.27 -0.3
448,507 + 10610 mRNA_2242 0.27 -0.3
448,609 - 10610 mRNA_2242 0.34 0.3
448,611 - 10610 mRNA_2242 0.34 -0.4
448,623 + 10610 mRNA_2242 0.35 0.8
448,640 + 10610 mRNA_2242 0.36 0.7
448,647 - 10610 mRNA_2242 0.36 -0.1
448,656 + 10610 mRNA_2242 0.37 0.3
448,662 - 10610 mRNA_2242 0.37 -1.0
448,851 + 10610 mRNA_2242 0.49 -1.4
448,940 + 10610 mRNA_2242 0.54 0.2
448,967 - 10610 mRNA_2242 0.56 0.2
449,089 + 10610 mRNA_2242 0.63 0.8
449,091 - 10610 mRNA_2242 0.63 -2.0
449,101 + 10610 mRNA_2242 0.64 1.2
449,241 + 10610 mRNA_2242 0.73 0.3
449,423 - 10610 mRNA_2242 0.84 -0.5
449,680 + -0.8
449,698 + -0.4
449,833 + -0.8
449,996 + -0.2
450,014 - -0.3
450,306 + 2.5
450,420 + 10611 mRNA_2243 0.13 -0.5
450,572 + 10611 mRNA_2243 0.21 0.5