Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2218

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384694 to 386223 10586 mRNA_2219: 10587 - Hypothetical Protein, at 386723 to 388300 10587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,742 - 10585 mRNA_2217 0.64 0.2
383,882 + 10585 mRNA_2217 0.70 0.2
383,904 - 10585 mRNA_2217 0.71 0.5
384,124 - 10585 mRNA_2217 0.81 0.8
384,288 + 10585 mRNA_2217 0.88 0.5
384,459 + 0.4
384,511 + -0.6
385,121 + 10586 mRNA_2218 0.28 0.3
385,242 - 10586 mRNA_2218 0.36 -0.1
385,274 + 10586 mRNA_2218 0.38 -1.3
385,428 - 10586 mRNA_2218 0.48 0.0
385,443 - 10586 mRNA_2218 0.49 -0.5
385,554 + 10586 mRNA_2218 0.56 -1.2
385,702 - 10586 mRNA_2218 0.66 -0.7
385,712 + 10586 mRNA_2218 0.67 -0.2
385,718 - 10586 mRNA_2218 0.67 -2.0
385,734 + 10586 mRNA_2218 0.68 0.1
385,912 + 10586 mRNA_2218 0.80 2.0
386,072 + 0.7
386,072 + -0.5
386,307 - -0.5
386,325 + -0.7
386,337 + 0.1
386,498 + -1.0
386,780 + 0.4
386,960 - 10587 mRNA_2219 0.15 -0.1
387,063 - 10587 mRNA_2219 0.22 -1.5
387,216 - 10587 mRNA_2219 0.31 -2.0