Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2217

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584 mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384694 to 386223 10586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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381,456 - -0.7
381,464 + -2.0
381,468 + 3.4
381,472 - 0.2
381,472 + -0.6
381,474 + -0.9
381,482 + -1.1
381,559 - -0.8
381,586 - 0.6
381,593 - 1.8
381,595 - 1.6
381,604 + 0.3
381,612 - -2.2
381,613 + -0.6
381,614 + 0.1
381,614 + 0.7
381,618 + 1.3
381,620 + -0.7
381,624 - -1.4
381,626 + 0.0
381,626 - -0.2
381,628 + 0.3
381,628 + 0.1
381,700 + -0.9
381,703 - 0.6
381,709 - -0.5
381,709 - -1.2
381,711 + 0.7
381,716 + 1.8
381,723 + 3.1
381,725 - 0.2
381,728 + 0.2
381,729 + -1.2
381,737 - 0.6
381,740 + -1.6
381,746 + 1.1
381,746 + 0.8
381,779 + -1.2
381,783 + 0.8
381,906 + 0.2
382,005 - -2.1
382,035 - 1.5
382,430 - 2.0
382,500 - 0.0
382,740 - 10585 mRNA_2217 0.18 -2.6
383,287 + 10585 mRNA_2217 0.43 0.3
383,742 - 10585 mRNA_2217 0.64 0.2
383,882 + 10585 mRNA_2217 0.70 0.2
383,904 - 10585 mRNA_2217 0.71 0.5
384,124 - 10585 mRNA_2217 0.81 0.8
384,288 + 10585 mRNA_2217 0.88 0.5
384,459 + 0.4
384,511 + -0.6
385,121 + 10586 mRNA_2218 0.28 0.3
385,242 - 10586 mRNA_2218 0.36 -0.1
385,274 + 10586 mRNA_2218 0.38 -1.3
385,428 - 10586 mRNA_2218 0.48 0.0
385,443 - 10586 mRNA_2218 0.49 -0.5