Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2208

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353107 to 355052 10575 mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355291 to 358512 10576 mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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354,382 - 10575 mRNA_2207 0.66 -0.2
354,656 - 10575 mRNA_2207 0.80 0.9
354,681 - 10575 mRNA_2207 0.81 -0.6
354,919 - 0.7
354,950 - -0.5
355,085 + 0.2
355,199 + -0.5
355,215 - 0.0
355,429 - -1.0
355,655 - 10576 mRNA_2208 0.11 -2.0
355,946 - 10576 mRNA_2208 0.20 -0.4
356,007 + 10576 mRNA_2208 0.22 1.1
356,109 + 10576 mRNA_2208 0.25 -1.4
356,112 + 10576 mRNA_2208 0.25 -0.4
356,422 + 10576 mRNA_2208 0.35 -1.7
356,832 + 10576 mRNA_2208 0.48 0.0
356,999 + 10576 mRNA_2208 0.53 -0.4
357,222 - 10576 mRNA_2208 0.60 1.9
357,454 + 10576 mRNA_2208 0.67 0.6
357,558 + 10576 mRNA_2208 0.70 0.2
358,177 + 10576 mRNA_2208 0.90 1.1
358,265 + 0.4
358,463 + 0.9
358,508 - 0.3
358,584 + 0.0
358,718 - 0.3
358,889 + 1.6
358,895 - -0.4
358,915 + 0.4
358,942 - -0.8
359,064 + -0.5
359,164 - -1.3
359,195 + 0.3
359,240 + -0.8
359,312 - -1.0