Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2171

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240753 to 243794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244214 to 249218 10539 mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249604 to 252159 10540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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243,260 - 10538 mRNA_2170 0.82 -0.9
243,889 + -2.6
244,018 - -0.0
244,023 - -2.5
244,023 + 0.6
244,162 + 2.2
244,163 - -0.8
244,163 - 0.2
244,182 - 0.0
244,188 + 0.4
244,272 + -1.7
244,455 - 0.1
244,489 + 0.4
244,624 - 0.7
244,626 + -0.2
245,074 + 10539 mRNA_2171 0.17 -1.3
245,104 - 10539 mRNA_2171 0.18 -2.2
245,111 - 10539 mRNA_2171 0.18 -0.8
245,311 + 10539 mRNA_2171 0.22 -1.2
245,602 - 10539 mRNA_2171 0.28 1.6
245,605 + 10539 mRNA_2171 0.28 -0.1
245,651 + 10539 mRNA_2171 0.29 0.1
245,723 - 10539 mRNA_2171 0.30 -0.1
245,746 + 10539 mRNA_2171 0.31 0.9
245,746 - 10539 mRNA_2171 0.31 -1.7
245,773 + 10539 mRNA_2171 0.31 1.6
246,024 + 10539 mRNA_2171 0.36 0.2
246,217 - 10539 mRNA_2171 0.40 -0.8
246,551 - 10539 mRNA_2171 0.47 0.8
246,628 + 10539 mRNA_2171 0.48 1.9
246,747 - 10539 mRNA_2171 0.51 2.0
246,759 + 10539 mRNA_2171 0.51 0.1
246,762 - 10539 mRNA_2171 0.51 -0.3
246,768 + 10539 mRNA_2171 0.51 -0.1
246,884 + 10539 mRNA_2171 0.53 0.1
247,191 - 10539 mRNA_2171 0.59 -0.9
247,352 - 10539 mRNA_2171 0.63 -0.2
247,673 - 10539 mRNA_2171 0.69 -2.5
247,679 + 10539 mRNA_2171 0.69 -0.3
247,864 + 10539 mRNA_2171 0.73 -0.4
248,345 - 10539 mRNA_2171 0.83 0.3
248,650 + 10539 mRNA_2171 0.89 -0.4
248,656 + 10539 mRNA_2171 0.89 0.8
248,956 - 0.6
248,969 - 0.2
249,116 - 0.9
249,242 - 0.4
249,271 + -0.0
249,515 + 0.4
249,647 - 0.1