Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2102

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2101: 10469 - K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7, at 73173 to 76460 10469 mRNA_2102: 10470 - SUPERFAMILY--SSF53067, at 76785 to 80345 10470 mRNA_2103: 10471 - Hypothetical Protein, at 80514 to 81311 10471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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75,869 - 10469 mRNA_2101 0.82 0.8
76,021 + 10469 mRNA_2101 0.87 0.6
76,128 - 10469 mRNA_2101 0.90 0.7
76,551 - -0.8
76,703 + -0.9
76,919 + 0.0
76,927 + 0.6
77,013 + 2.3
77,206 + 10470 mRNA_2102 0.12 0.2
77,264 + 10470 mRNA_2102 0.13 0.5
77,337 + 10470 mRNA_2102 0.16 0.0
77,390 + 10470 mRNA_2102 0.17 0.7
77,675 + 10470 mRNA_2102 0.25 -1.1
77,676 - 10470 mRNA_2102 0.25 0.8
77,801 - 10470 mRNA_2102 0.29 0.5
77,812 - 10470 mRNA_2102 0.29 1.9
77,879 + 10470 mRNA_2102 0.31 -1.0
77,953 - 10470 mRNA_2102 0.33 0.2
77,963 - 10470 mRNA_2102 0.33 -2.1
78,023 + 10470 mRNA_2102 0.35 1.8
78,023 + 10470 mRNA_2102 0.35 0.4
78,026 - 10470 mRNA_2102 0.35 -0.3
78,047 + 10470 mRNA_2102 0.35 -0.2
78,355 - 10470 mRNA_2102 0.44 1.0
78,516 + 10470 mRNA_2102 0.49 -0.5
78,517 - 10470 mRNA_2102 0.49 -0.4
78,628 + 10470 mRNA_2102 0.52 -0.1
78,668 + 10470 mRNA_2102 0.53 1.0
78,682 - 10470 mRNA_2102 0.53 -1.1
78,951 + 10470 mRNA_2102 0.61 -0.6
79,204 + 10470 mRNA_2102 0.68 0.9
79,376 + 10470 mRNA_2102 0.73 -1.5
79,377 - 10470 mRNA_2102 0.73 -3.9
79,665 + 10470 mRNA_2102 0.81 0.1
80,131 + -0.3
80,372 + 0.1
80,794 - 10471 mRNA_2103 0.35 -1.1
80,825 - 10471 mRNA_2103 0.39 0.8
80,825 - 10471 mRNA_2103 0.39 0.2
80,825 - 10471 mRNA_2103 0.39 -0.8
80,960 + 10471 mRNA_2103 0.56 -2.5
80,969 + 10471 mRNA_2103 0.57 0.4
81,096 + 10471 mRNA_2103 0.73 0.3
81,102 - 10471 mRNA_2103 0.74 -0.5
81,107 + 10471 mRNA_2103 0.74 0.4
81,108 - 10471 mRNA_2103 0.74 1.0
81,111 - 10471 mRNA_2103 0.75 -1.4
81,128 + 10471 mRNA_2103 0.77 -0.7
81,138 + 10471 mRNA_2103 0.78 0.3
81,190 + 10471 mRNA_2103 0.85 -0.1