Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2091

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458 mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49502 to 51805 10459 mRNA_2092: 10460 - K20457 DHFS dihydrofolate synthase, at 52629 to 54149 10460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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48,648 - 10458 mRNA_2090 0.38 -1.4
49,170 + 10458 mRNA_2090 0.87 0.7
49,320 + -1.9
49,459 - -0.9
49,499 + -0.7
49,512 + -0.3
49,576 + -0.0
49,649 - -0.3
49,948 - 10459 mRNA_2091 0.19 -0.3
49,989 + 10459 mRNA_2091 0.21 0.3
50,196 + 10459 mRNA_2091 0.30 2.2
50,383 + 10459 mRNA_2091 0.38 -0.6
50,592 - 10459 mRNA_2091 0.47 -0.7
50,592 + 10459 mRNA_2091 0.47 -0.5
50,597 - 10459 mRNA_2091 0.48 0.2
50,630 - 10459 mRNA_2091 0.49 -2.1
50,637 + 10459 mRNA_2091 0.49 -0.1
50,684 + 10459 mRNA_2091 0.51 0.5
50,925 + 10459 mRNA_2091 0.62 -0.2
50,936 + 10459 mRNA_2091 0.62 -0.6
50,959 - 10459 mRNA_2091 0.63 -0.4
50,966 - 10459 mRNA_2091 0.64 -0.1
51,200 - 10459 mRNA_2091 0.74 3.1
51,215 - 10459 mRNA_2091 0.74 -0.9
51,230 + 10459 mRNA_2091 0.75 -0.3
51,651 + -0.0
51,664 + 1.3
51,791 - 2.0
51,941 + 1.5
52,062 + -0.9
52,076 - 0.0
52,234 + 0.0
52,281 + 0.6
52,541 + -0.9
52,683 + -0.0