Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2090

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457 mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458 mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49502 to 51805 10459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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47,449 - 10457 mRNA_2089 0.81 0.0
47,683 - 0.3
47,847 + -0.6
48,118 - 2.3
48,127 - 1.4
48,127 + 0.3
48,133 - -0.4
48,133 - -0.2
48,163 - -0.3
48,165 - -0.6
48,172 + -0.1
48,183 - -1.0
48,234 + -1.5
48,265 + 0.4
48,461 + 10458 mRNA_2090 0.20 0.1
48,474 + 10458 mRNA_2090 0.21 -1.8
48,648 - 10458 mRNA_2090 0.38 -1.4
49,170 + 10458 mRNA_2090 0.87 0.7
49,320 + -1.9
49,459 - -0.9
49,499 + -0.7
49,512 + -0.3
49,576 + -0.0
49,649 - -0.3
49,948 - 10459 mRNA_2091 0.19 -0.3
49,989 + 10459 mRNA_2091 0.21 0.3
50,196 + 10459 mRNA_2091 0.30 2.2