Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2089

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456 mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457 mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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44,473 - 10456 mRNA_2088 0.47 0.0
44,507 + 10456 mRNA_2088 0.49 -2.0
44,802 + 10456 mRNA_2088 0.72 -0.4
44,818 - 10456 mRNA_2088 0.74 -0.4
44,901 - 10456 mRNA_2088 0.80 1.1
44,914 - 10456 mRNA_2088 0.81 -0.1
44,934 - 10456 mRNA_2088 0.83 -1.2
45,139 + 1.1
45,258 + 0.2
45,335 + -0.2
45,387 - -0.2
45,825 + 10457 mRNA_2089 0.18 -1.0
45,956 + 10457 mRNA_2089 0.23 1.3
46,101 - 10457 mRNA_2089 0.29 0.1
46,491 - 10457 mRNA_2089 0.44 -0.0
46,656 - 10457 mRNA_2089 0.50 0.3
46,679 - 10457 mRNA_2089 0.51 1.6
46,768 - 10457 mRNA_2089 0.55 0.7
46,950 - 10457 mRNA_2089 0.62 0.8
47,449 - 10457 mRNA_2089 0.81 0.0
47,683 - 0.3
47,847 + -0.6
48,118 - 2.3
48,127 - 1.4
48,127 + 0.3
48,133 - -0.4
48,133 - -0.2
48,163 - -0.3
48,165 - -0.6
48,172 + -0.1
48,183 - -1.0
48,234 + -1.5
48,265 + 0.4
48,461 + 10458 mRNA_2090 0.20 0.1
48,474 + 10458 mRNA_2090 0.21 -1.8
48,648 - 10458 mRNA_2090 0.38 -1.4