Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2088

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41484 to 43178 10455 mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456 mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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43,191 + 1.0
43,353 - 1.0
43,451 - 1.6
43,484 - 1.6
43,487 - 0.0
43,489 + 0.0
43,494 + 0.8
43,498 + 0.1
43,566 - 0.9
43,590 - -1.1
43,602 - 1.5
43,639 - 0.6
43,744 - 0.3
43,752 + 0.1
43,770 + 0.4
43,770 + 0.6
43,770 + 0.7
43,787 + -0.8
43,796 + -2.0
43,898 - -0.8
43,916 - -0.5
43,941 + -0.4
44,014 - 10456 mRNA_2088 0.11 2.1
44,320 - 10456 mRNA_2088 0.35 -0.9
44,473 - 10456 mRNA_2088 0.47 0.0
44,507 + 10456 mRNA_2088 0.49 -2.0
44,802 + 10456 mRNA_2088 0.72 -0.4
44,818 - 10456 mRNA_2088 0.74 -0.4
44,901 - 10456 mRNA_2088 0.80 1.1
44,914 - 10456 mRNA_2088 0.81 -0.1
44,934 - 10456 mRNA_2088 0.83 -1.2
45,139 + 1.1
45,258 + 0.2
45,335 + -0.2
45,387 - -0.2
45,825 + 10457 mRNA_2089 0.18 -1.0
45,956 + 10457 mRNA_2089 0.23 1.3
46,101 - 10457 mRNA_2089 0.29 0.1