Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2085

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38392 to 39762 10453 mRNA_2086: 10454 - Hypothetical Protein, at 40220 to 41311 10454

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,481 - 1.1
37,483 + -0.5
37,492 - -0.5
37,496 + 0.6
37,513 - 0.6
37,569 + -0.2
37,615 + -2.9
37,615 - 0.1
37,631 + -0.1
37,635 - 1.0
37,638 + 0.1
37,639 + -0.5
37,640 - 0.4
37,644 + 1.3
37,830 - 3.2
37,837 + -0.4
37,846 + 1.6
37,923 + -0.6
37,940 + 0.2
37,940 - -0.2
38,103 - -0.5
38,227 - -1.2
38,943 - 10453 mRNA_2085 0.40 -0.8
39,149 + 10453 mRNA_2085 0.55 -1.1
39,228 - 10453 mRNA_2085 0.61 1.0
39,379 - 10453 mRNA_2085 0.72 -0.9
39,675 - 1.5
40,069 + -0.9
40,077 - 0.5
40,209 - 1.0
40,228 + -0.4
40,312 + -1.4
40,315 - 1.2
40,695 + 10454 mRNA_2086 0.43 -1.5
40,700 - 10454 mRNA_2086 0.44 -1.9
40,718 - 10454 mRNA_2086 0.46 -0.2
40,718 + 10454 mRNA_2086 0.46 0.3