Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2083

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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29,512 + -0.4
29,516 - -0.2
29,525 - -0.1
29,526 + 0.5
29,530 + -0.0
29,532 - 0.5
29,535 - -2.0
29,551 - 0.6
29,700 - 1.2
29,708 + -0.1
29,710 + 1.9
29,711 + 0.4
29,738 + 1.0
29,818 - -0.6
29,851 + 0.4
29,867 + 1.9
29,886 - -0.1
30,572 - 0.4
30,587 + 0.6
30,772 - 10451 mRNA_2083 0.13 0.0
30,868 + 10451 mRNA_2083 0.15 0.6
31,268 - 10451 mRNA_2083 0.26 0.9
31,318 + 10451 mRNA_2083 0.27 2.0
31,349 - 10451 mRNA_2083 0.28 0.5
31,414 - 10451 mRNA_2083 0.29 -1.5
33,036 + 10451 mRNA_2083 0.71 1.8
33,217 + 10451 mRNA_2083 0.76 1.9
33,221 + 10451 mRNA_2083 0.76 -2.7
33,509 - 10451 mRNA_2083 0.83 -1.8
33,577 - 10451 mRNA_2083 0.85 -1.7
33,630 + 10451 mRNA_2083 0.86 -2.0
33,816 + 0.5
33,833 + 0.7
33,961 + 0.6
33,964 - -1.3
33,973 + 0.8
34,091 - -1.1
34,118 + 0.2
34,215 - 1.2
34,266 - 0.6
34,369 + 1.0
34,692 - 1.9
34,980 + 10452 mRNA_2084 0.12 1.0
35,015 + 10452 mRNA_2084 0.13 -0.1
35,019 - 10452 mRNA_2084 0.13 0.5
35,150 + 10452 mRNA_2084 0.18 1.1