Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2076

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13225 to 14495 10443 mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14987 to 18739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14,030 - 10443 mRNA_2075 0.63 0.3
14,320 - 10443 mRNA_2075 0.86 -0.7
14,332 + 10443 mRNA_2075 0.87 0.2
14,454 - -1.3
14,626 - 1.8
14,757 - 0.2
14,811 - 1.0
14,867 + 0.4
15,085 + -0.2
15,241 + 0.1
15,370 - 10444 mRNA_2076 0.10 0.8
15,435 - 10444 mRNA_2076 0.12 1.4
15,498 - 10444 mRNA_2076 0.14 0.2
15,501 - 10444 mRNA_2076 0.14 0.0
15,657 + 10444 mRNA_2076 0.18 0.0
15,720 - 10444 mRNA_2076 0.20 0.8
15,823 + 10444 mRNA_2076 0.22 0.2
15,936 - 10444 mRNA_2076 0.25 1.1
15,960 + 10444 mRNA_2076 0.26 0.7
15,991 - 10444 mRNA_2076 0.27 -1.8
16,098 + 10444 mRNA_2076 0.30 1.1
16,124 - 10444 mRNA_2076 0.30 -0.1
16,137 - 10444 mRNA_2076 0.31 0.8
16,257 + 10444 mRNA_2076 0.34 -0.1
16,265 + 10444 mRNA_2076 0.34 0.1
16,389 - 10444 mRNA_2076 0.37 -0.9
16,832 + 10444 mRNA_2076 0.49 0.0
17,032 + 10444 mRNA_2076 0.54 1.3
17,078 - 10444 mRNA_2076 0.56 -2.3
17,214 + 10444 mRNA_2076 0.59 -0.7
17,248 - 10444 mRNA_2076 0.60 0.3
17,451 + 10444 mRNA_2076 0.66 0.0
17,453 - 10444 mRNA_2076 0.66 0.3
17,588 + 10444 mRNA_2076 0.69 1.6
17,738 + 10444 mRNA_2076 0.73 -0.8
17,760 - 10444 mRNA_2076 0.74 1.9
17,808 + 10444 mRNA_2076 0.75 2.1
17,870 + 10444 mRNA_2076 0.77 2.1
17,981 - 10444 mRNA_2076 0.80 1.5
18,033 + 10444 mRNA_2076 0.81 1.5
18,192 - 10444 mRNA_2076 0.85 -0.0
18,548 + 0.1
18,639 + 2.0
18,742 - 2.5
18,860 + -0.1
18,863 - 0.8
18,878 - -1.1
19,094 + 1.2
19,127 - -0.3
19,187 - 0.3
19,313 - 10445 mRNA_2077 0.19 1.4
19,326 - 10445 mRNA_2077 0.20 1.3
19,482 - 10445 mRNA_2077 0.34 -0.1
19,649 - 10445 mRNA_2077 0.49 1.7
19,663 + 10445 mRNA_2077 0.50 0.6
19,676 - 10445 mRNA_2077 0.51 1.7