Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2073

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2072: 10440 - KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13, at 7627 to 8732 10440 mRNA_2073: 10441 - Hypothetical Protein, at 8998 to 9576 10441 mRNA_2074: 10442 - HMMPfam-Chromate transporter-PF02417, at 9879 to 11848 10442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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8,479 + 10440 mRNA_2072 0.77 -0.1
8,538 - 10440 mRNA_2072 0.82 -0.7
8,691 - 1.6
8,715 + 0.0
8,729 + 0.3
8,729 + 0.3
8,816 + 0.3
8,816 + 0.8
8,848 + 1.0
8,864 - 0.4
8,884 - -2.1
8,887 + 0.6
8,889 + -0.3
8,899 - 0.4
8,902 + -0.1
8,904 + -0.9
9,068 - 10441 mRNA_2073 0.12 1.7
9,479 + 10441 mRNA_2073 0.83 1.7
9,483 - 10441 mRNA_2073 0.84 -0.2
9,487 - 10441 mRNA_2073 0.84 1.4
9,623 + 0.7
9,739 - -1.3
9,785 - 0.1
9,788 - 0.3
9,788 - -0.7
9,936 + 0.0
10,090 - 10442 mRNA_2074 0.11 -0.5
10,272 + 10442 mRNA_2074 0.20 0.2