Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2052

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836699 to 837795 10419 mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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837,827 - 1.2
837,959 - 1.0
838,000 - 1.1
838,130 + 1.3
838,279 - 0.9
838,309 + 0.3
838,414 + 2.1
838,483 + 0.6
838,535 - 2.0
838,538 + -0.8
838,568 - -1.6
838,569 + 0.4
838,570 + 1.6
838,571 + -0.9
838,571 + -0.1
838,572 + -0.8
838,579 + -2.3
838,580 + -0.7
838,583 + -1.8
838,587 + -0.7
838,595 + 0.1
838,596 + 0.5
838,597 + -0.8
838,760 + -2.1
838,909 + -0.2
839,087 + 10420 mRNA_2052 0.12 0.6
839,170 + 10420 mRNA_2052 0.15 -3.0
839,172 - 10420 mRNA_2052 0.15 2.0
839,326 + 10420 mRNA_2052 0.20 1.1
839,443 - 10420 mRNA_2052 0.24 0.5
839,663 + 10420 mRNA_2052 0.31 -0.5
839,686 - 10420 mRNA_2052 0.32 0.4
839,693 + 10420 mRNA_2052 0.32 0.5
839,794 + 10420 mRNA_2052 0.36 0.7
840,073 + 10420 mRNA_2052 0.45 -0.8
840,229 - 10420 mRNA_2052 0.50 -1.0
840,502 + 10420 mRNA_2052 0.59 0.5
840,564 - 10420 mRNA_2052 0.61 -0.5
840,753 - 10420 mRNA_2052 0.67 -1.3
840,789 - 10420 mRNA_2052 0.68 -0.8
840,791 + 10420 mRNA_2052 0.68 0.3
841,042 + 10420 mRNA_2052 0.77 -0.3
841,219 - 10420 mRNA_2052 0.83 0.5
841,221 + 10420 mRNA_2052 0.83 -0.3
841,411 - 10420 mRNA_2052 0.89 -1.0
841,483 + 0.8
841,751 + -1.5
841,808 - 1.3
841,949 + -1.3
841,971 - -2.0
842,060 - -0.5
842,112 + 0.2
842,120 - -0.2
842,257 - 1.1
842,523 - 10421 mRNA_2053 0.21 1.7
842,523 - 10421 mRNA_2053 0.21 2.6
842,669 - 10421 mRNA_2053 0.27 -0.8
842,725 - 10421 mRNA_2053 0.29 -1.6