Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2024

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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769,267 + 10391 mRNA_2023 0.70 -2.0
769,452 - 10391 mRNA_2023 0.77 0.3
769,752 + 10391 mRNA_2023 0.90 1.8
769,860 - -0.8
770,012 - -1.3
770,015 - -1.1
770,024 + -1.8
770,032 - -0.5
770,033 + 0.2
770,052 + 1.1
770,052 + -1.1
770,177 - 0.2
770,184 + -1.2
770,187 - 0.4
770,464 - 3.1
770,745 - 10392 mRNA_2024 0.17 0.3
770,908 - 10392 mRNA_2024 0.22 0.0
771,044 + 10392 mRNA_2024 0.26 -0.3
771,341 - 10392 mRNA_2024 0.35 -0.3
771,354 + 10392 mRNA_2024 0.35 1.2
771,502 + 10392 mRNA_2024 0.40 -2.4
771,633 + 10392 mRNA_2024 0.44 0.1
771,655 - 10392 mRNA_2024 0.44 -0.2
771,722 - 10392 mRNA_2024 0.46 1.4
772,031 + 10392 mRNA_2024 0.56 -0.8
772,947 - 10392 mRNA_2024 0.83 -3.0
773,452 - 0.6
773,518 + -0.2
773,670 - -1.9
773,672 + -1.5
773,808 - 1.1
773,832 - -0.7
773,836 - -1.3
773,843 - 1.2
773,843 + -0.5
773,850 + 0.9
773,864 - 0.5
773,981 - 0.3
773,997 + -0.3
774,001 + 0.5
774,117 - 1.1
774,121 - 1.7
774,147 + -1.0
774,263 + 10393 mRNA_2025 0.13 0.7
774,306 + 10393 mRNA_2025 0.15 0.2
774,388 - 10393 mRNA_2025 0.18 0.9
774,416 - 10393 mRNA_2025 0.19 -0.6
774,440 - 10393 mRNA_2025 0.20 -1.4
774,441 + 10393 mRNA_2025 0.20 0.1
774,441 + 10393 mRNA_2025 0.20 -0.4