Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2011

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734428 to 736399 10378 mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737348 to 740033 10379 mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740635 to 742993 10380

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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736,663 + 1.7
736,849 + 0.5
737,118 - 1.4
737,121 + -0.1
737,235 + -0.7
737,593 - -0.1
737,862 + 10379 mRNA_2011 0.19 0.2
737,883 + 10379 mRNA_2011 0.20 -0.7
738,276 + 10379 mRNA_2011 0.35 0.6
738,311 + 10379 mRNA_2011 0.36 0.4
738,322 + 10379 mRNA_2011 0.36 -0.2
738,633 + 10379 mRNA_2011 0.48 0.2
738,648 + 10379 mRNA_2011 0.48 -2.8
738,753 + 10379 mRNA_2011 0.52 0.3
739,482 + 10379 mRNA_2011 0.79 0.4
739,685 + 10379 mRNA_2011 0.87 -0.3
739,920 + -1.3
739,924 - -1.0
739,978 - 0.9
740,260 - 1.6
740,261 + 2.1
740,280 - -0.2
740,430 - 1.1
740,433 + -0.0
740,439 - -1.3
740,439 + 0.8
740,443 + 1.1
740,449 + 0.6
740,449 + -1.2
740,454 + 0.8
740,459 + -1.5
740,498 - 0.5
740,504 + -0.8
740,533 + -2.0
740,540 + -1.6
740,558 + 1.5
740,559 + -0.5
740,566 - -0.2
740,569 - -1.2
740,570 - -2.7
740,570 - -0.5
740,571 + 0.7
740,582 + -1.1
740,582 + -0.5
740,612 + 1.0
740,665 + -0.3
740,730 - -0.8
741,012 + 10380 mRNA_2012 0.16 -0.5