Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2006

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720750 to 723688 10373 mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729212 to 731398 10375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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723,328 - 10373 mRNA_2005 0.88 0.3
723,454 + -0.3
723,485 - 1.3
723,496 - -0.6
723,500 + 0.9
723,594 - -0.4
723,628 + 0.1
723,648 - 2.1
723,650 + 1.7
723,655 + 0.0
723,755 - -0.0
723,760 + -0.5
723,768 - 2.1
723,768 - 0.3
723,777 - 1.1
723,778 + 2.6
723,781 + 0.3
723,829 + 0.0
723,838 + 1.8
723,843 - -0.6
723,852 + 0.7
723,862 + 0.1
723,863 - 0.3
723,993 - -1.1
723,997 - -0.1
724,061 + 1.0
724,068 - -0.9
724,073 + 0.1
724,101 + -0.3
724,111 - -0.0
724,195 - -3.1
724,208 - 0.2
724,213 - -0.6
724,226 - -0.7
724,229 + -1.0
724,233 - 1.0
724,235 + -0.3
724,245 - -0.2
724,247 - 1.5
724,518 - 0.5
724,547 + -1.1
724,575 + -0.6
724,786 - 10374 mRNA_2006 0.12 0.4
725,233 - 10374 mRNA_2006 0.21 -0.3
725,373 + 10374 mRNA_2006 0.24 0.3
725,523 - 10374 mRNA_2006 0.27 -0.7
725,561 - 10374 mRNA_2006 0.28 -1.5
725,669 + 10374 mRNA_2006 0.31 1.3
725,785 + 10374 mRNA_2006 0.33 -1.0
725,901 - 10374 mRNA_2006 0.35 -1.5
725,969 - 10374 mRNA_2006 0.37 -1.7
726,098 + 10374 mRNA_2006 0.40 -4.1
726,186 + 10374 mRNA_2006 0.41 -2.7
726,462 + 10374 mRNA_2006 0.47 -1.2
726,934 + 10374 mRNA_2006 0.57 -1.8
727,182 - 10374 mRNA_2006 0.62 -1.6
727,190 + 10374 mRNA_2006 0.63 -2.1
727,742 - 10374 mRNA_2006 0.74 0.9
727,836 + 10374 mRNA_2006 0.76 0.6
728,149 + 10374 mRNA_2006 0.83 -0.2
728,685 + -0.2
729,222 - -1.2
729,249 + 0.0
729,263 + -0.0
729,315 + 0.0
729,355 - 1.2
729,459 + 10375 mRNA_2007 0.11 -0.8
729,763 + 10375 mRNA_2007 0.25 -3.1
729,888 - 10375 mRNA_2007 0.31 1.2