Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1968

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630264 to 633467 10335 mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633859 to 635339 10336 mRNA_1969: 10337 - K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1, at 635638 to 637721 10337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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632,925 - 10335 mRNA_1967 0.83 -1.1
633,526 - -0.0
633,532 + 0.2
633,533 + -0.5
633,673 + -0.2
633,684 + -0.8
633,707 + -1.2
633,715 + 1.8
633,763 - 1.7
633,807 + 0.7
633,825 - -1.2
633,831 + -0.3
633,833 + 0.5
633,834 - 1.3
633,835 - 1.3
633,841 - 0.2
633,964 + -0.3
633,978 + 1.0
634,008 - 10336 mRNA_1968 0.10 -0.8
634,091 + 10336 mRNA_1968 0.16 -0.3
634,615 + 10336 mRNA_1968 0.51 0.8
634,825 - 10336 mRNA_1968 0.65 -0.0
635,258 - -0.5
635,420 + -0.4
635,511 - 1.0
635,532 - 0.1
635,546 - -0.1
635,559 + 0.6
635,705 + 0.3
635,848 - 10337 mRNA_1969 0.10 0.6
636,142 - 10337 mRNA_1969 0.24 1.6