Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1946

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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574,139 - 2.4
574,157 - -2.1
574,163 - -0.1
574,169 - 1.1
574,169 - 0.2
574,172 + 0.6
574,173 + -0.1
574,175 + 0.5
574,178 - 0.6
574,183 + 0.2
574,191 + 1.8
574,193 + -0.1
574,193 + 0.8
574,289 - -1.2
574,384 + -0.1
574,450 - 10313 mRNA_1945 0.12 0.9
574,459 + 10313 mRNA_1945 0.14 2.4
574,470 - 10313 mRNA_1945 0.15 0.3
574,475 + 10313 mRNA_1945 0.16 0.5
574,510 + 10313 mRNA_1945 0.20 1.1
574,572 + 10313 mRNA_1945 0.28 1.1
574,764 - 10313 mRNA_1945 0.52 -0.3
574,803 + 10313 mRNA_1945 0.57 -0.2
575,060 - 10313 mRNA_1945 0.89 -1.8
575,323 - 10314 mRNA_1946 0.10 0.6
575,481 + 10314 mRNA_1946 0.18 -0.2
575,652 - 10314 mRNA_1946 0.27 0.9
575,652 + 10314 mRNA_1946 0.27 -1.0
576,687 + 10314 mRNA_1946 0.80 -1.0
576,826 - 10314 mRNA_1946 0.87 -0.1
576,969 + -0.4
576,995 + 1.0
577,010 + -0.3
577,038 - 0.5
577,122 - 0.5
577,176 + 1.6
577,437 + 0.9
577,444 + -0.7
577,548 - 10315 mRNA_1947 0.15 -1.9
577,836 - 10315 mRNA_1947 0.37 0.6
577,838 + 10315 mRNA_1947 0.37 0.7
577,851 - 10315 mRNA_1947 0.38 -0.2
577,987 - 10315 mRNA_1947 0.48 -0.5