Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1942

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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566,514 - 10309 mRNA_1941 0.82 -1.6
566,641 - 10309 mRNA_1941 0.87 -1.7
566,650 + 10309 mRNA_1941 0.87 -0.7
566,663 - 10309 mRNA_1941 0.88 -0.5
566,689 - 10309 mRNA_1941 0.89 1.0
566,882 - -1.3
566,995 + -0.2
567,101 - -1.1
567,109 - -0.6
567,112 + -1.6
567,232 - -0.1
567,253 + -1.1
567,376 - -0.8
567,399 - -0.3
567,510 + 0.4
567,536 + 1.5
567,546 + 1.7
567,547 + -0.3
567,552 - -0.0
567,699 - 2.3
567,702 + -0.1
568,004 - 10310 mRNA_1942 0.16 1.2
568,465 + 10310 mRNA_1942 0.30 0.5
568,808 - 10310 mRNA_1942 0.40 0.1
568,809 + 10310 mRNA_1942 0.40 1.3
569,173 + 10310 mRNA_1942 0.50 -0.8
569,194 + 10310 mRNA_1942 0.51 -1.9
569,754 - 10310 mRNA_1942 0.67 2.2
570,017 + 10310 mRNA_1942 0.75 -1.3
570,203 - 10310 mRNA_1942 0.80 1.6
570,702 - 0.7
570,794 - -4.0
570,929 - -1.3
571,211 + 0.0
571,258 + 10311 mRNA_1943 0.11 -0.2
571,348 - 10311 mRNA_1943 0.20 0.6
571,417 - 10311 mRNA_1943 0.26 -0.1
571,420 - 10311 mRNA_1943 0.26 -1.8
571,492 - 10311 mRNA_1943 0.33 -0.8
571,496 - 10311 mRNA_1943 0.34 -0.6
571,499 + 10311 mRNA_1943 0.34 -0.3
571,638 + 10311 mRNA_1943 0.47 1.0
571,785 - 10311 mRNA_1943 0.61 0.3
571,854 - 10311 mRNA_1943 0.67 0.1