Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1939

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306 mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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557,589 + 10306 mRNA_1938 0.60 0.6
557,738 - 10306 mRNA_1938 0.69 1.0
557,848 + 10306 mRNA_1938 0.75 0.4
558,163 + -0.1
558,268 + 0.4
558,272 - -2.6
558,618 - -0.5
559,072 + 10307 mRNA_1939 0.24 1.0
559,223 - 10307 mRNA_1939 0.32 0.2
559,228 + 10307 mRNA_1939 0.32 -0.0
559,360 + 10307 mRNA_1939 0.39 0.1
559,684 + 10307 mRNA_1939 0.55 0.3
559,817 - 10307 mRNA_1939 0.61 -1.6
559,836 + 10307 mRNA_1939 0.62 -0.1
559,894 + 10307 mRNA_1939 0.65 -0.9
560,181 + 10307 mRNA_1939 0.79 0.5
560,236 - 10307 mRNA_1939 0.82 -0.5
560,531 - 0.9
560,666 - 0.4
560,684 + -1.6
560,688 - -0.7
560,696 + 0.6
560,716 + 1.6
560,720 + 1.1
560,726 + 0.8
560,727 - -0.1
560,747 - -1.1
560,756 - -1.7
560,781 + -0.4
560,798 - 0.3
560,817 + 0.6
560,826 + 0.2
560,827 - -0.3
560,836 - -1.6
560,840 + -0.2
560,850 + -1.3
560,852 - 0.5
560,864 + -0.6
560,864 - -0.1
560,986 - 0.8
560,990 - 0.0
560,991 + -0.4
560,996 - -0.7
560,997 - -0.9
561,002 + 1.2
561,002 - 0.5
561,009 + 0.8
561,011 + -0.4
561,011 + 1.5
561,014 - -0.5
561,024 - 2.6
561,026 + -0.8
561,030 + 0.9
561,031 + 1.2
561,034 + -0.1
561,059 + 0.4
561,059 - -1.2
561,065 + 0.4
561,067 - 0.2
561,068 + -0.1
561,075 - -0.3
561,076 + -0.2
561,077 + 2.2
561,081 - -0.9
561,083 + 0.1
561,089 - -0.4
561,091 + 0.8
561,093 + -0.2
561,093 + -0.4
561,095 - -1.5
561,098 + -1.0
561,104 + 0.4
561,104 + -0.9
561,106 + 1.1
561,208 + 1.2
561,227 - -1.1
561,232 + -1.7
561,243 - -0.6
561,244 + 1.6
561,339 + 0.8
561,519 - 10308 mRNA_1940 0.14 -1.6
561,592 - 10308 mRNA_1940 0.16 0.7