Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1937

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551220 to 553834 10304 mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305 mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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553,466 + 10304 mRNA_1936 0.86 -0.1
553,727 - -0.0
553,734 - -1.7
553,865 + 0.1
553,868 + -0.7
553,890 - 1.4
553,893 + -0.0
553,903 + 0.0
553,909 - -2.5
553,916 + -0.6
553,945 - 0.0
553,981 - -1.3
554,011 + 0.1
554,025 + 2.0
554,029 - -1.4
554,038 - 0.7
554,040 + 0.8
554,040 + 0.9
554,046 + -0.7
554,064 + 0.2
554,069 + 0.7
554,074 + -0.1
554,084 + 0.7
554,096 + 0.4
554,105 + 0.5
554,147 - 1.8
554,147 - -0.1
554,149 - -0.1
554,165 - -1.0
554,165 - 0.6
554,165 + 0.5
554,174 - 0.6
554,185 + 0.9
554,326 - 1.1
554,334 - 0.7
554,336 + -0.7
554,349 + -1.9
554,350 + -1.6
554,361 + -0.4
554,367 + -2.4
554,470 + -0.1
554,816 - 10305 mRNA_1937 0.26 -0.1
555,084 - 10305 mRNA_1937 0.42 -3.1
556,233 + 0.5
556,233 - -1.3
556,259 - -0.6
556,395 - -0.9
556,401 - -1.1
556,431 + 0.5
556,535 + -1.3
556,538 + 0.0
556,546 + -1.2
556,691 - -0.0
556,879 - 10306 mRNA_1938 0.18 -0.7
556,948 + 10306 mRNA_1938 0.22 1.5
556,995 + 10306 mRNA_1938 0.25 -0.5