Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1929

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535979 to 537358 10297 mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537705 to 541731 10298

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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534,994 + -0.2
535,132 - 1.2
535,307 - -0.1
535,312 + 0.0
535,441 - 0.6
535,581 - 0.7
535,581 + -0.4
535,605 + -1.9
535,716 - 2.5
535,726 - -0.5
535,732 - 0.5
535,733 + -1.2
535,740 + 1.7
535,745 - -0.9
535,745 - 2.0
535,755 + 1.7
535,755 + -0.9
535,757 - -1.2
535,760 - 0.0
535,799 - 0.1
535,888 + 0.2
535,890 + 1.0
535,894 - -0.3
535,894 - 0.6
535,897 + -0.6
535,897 + -0.3
535,902 - -2.3
535,908 + -1.4
535,910 + -1.4
535,912 - 0.2
535,917 + -0.9
535,971 + -0.9
536,039 + -0.9
536,043 - -1.3
536,061 - -1.2
536,067 - -1.9
536,070 + 0.7
536,081 - 1.6
536,212 + 10297 mRNA_1929 0.17 -0.1
536,498 - 10297 mRNA_1929 0.38 0.2
536,770 - 10297 mRNA_1929 0.57 1.6
536,822 + 10297 mRNA_1929 0.61 0.7
536,956 - 10297 mRNA_1929 0.71 -0.4
537,037 - 10297 mRNA_1929 0.77 1.8
537,205 + 10297 mRNA_1929 0.89 -1.3
537,208 + 10297 mRNA_1929 0.89 -2.9
537,332 + 0.4
537,497 - 0.4
537,497 + 0.1
537,512 - 2.7
537,584 - -0.9
537,628 - 0.1
537,630 - 1.3
537,634 + -0.4
537,638 - -1.7
537,647 - 2.1
537,648 + 0.2
537,649 - -0.8
537,653 - 0.5
537,653 + 1.4
537,655 + 0.9
537,657 - 0.1
537,666 - -0.0
537,668 + 0.3