Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1927

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,414 + 10294 mRNA_1926 0.83 3.0
527,439 + 10294 mRNA_1926 0.84 1.6
527,441 - 10294 mRNA_1926 0.84 1.5
527,463 + 10294 mRNA_1926 0.85 0.6
527,611 - 0.3
527,732 + 0.8
527,735 - -0.2
527,742 + 0.0
527,838 - -0.6
527,851 - 0.1
527,865 - 1.9
527,869 - 0.6
527,889 - 0.1
527,894 + -1.0
527,942 - 1.3
527,945 - 0.5
528,044 - 0.5
528,070 - -0.3
528,086 + 2.4
528,349 - -0.6
528,500 + -0.1
528,597 + 0.4
528,642 - -1.1
528,903 - 10295 mRNA_1927 0.10 0.5
528,935 + 10295 mRNA_1927 0.11 -0.1
529,048 + 10295 mRNA_1927 0.13 -0.4
529,945 - 10295 mRNA_1927 0.32 -0.7
529,953 + 10295 mRNA_1927 0.32 -0.1
529,962 - 10295 mRNA_1927 0.32 -0.3
530,126 - 10295 mRNA_1927 0.36 -1.6
530,199 - 10295 mRNA_1927 0.37 0.5
530,266 + 10295 mRNA_1927 0.39 -1.0
530,377 + 10295 mRNA_1927 0.41 0.2
530,511 - 10295 mRNA_1927 0.44 -0.9
530,661 + 10295 mRNA_1927 0.47 -0.5
530,804 - 10295 mRNA_1927 0.50 0.8
530,848 + 10295 mRNA_1927 0.51 2.3
531,254 - 10295 mRNA_1927 0.59 0.0
531,465 + 10295 mRNA_1927 0.64 -0.6
531,554 - 10295 mRNA_1927 0.66 0.7
531,582 + 10295 mRNA_1927 0.66 0.0
531,814 - 10295 mRNA_1927 0.71 -0.6
532,420 + 10295 mRNA_1927 0.84 -2.5
532,541 - 10295 mRNA_1927 0.86 0.2
532,542 - 10295 mRNA_1927 0.86 0.5
532,547 + 10295 mRNA_1927 0.86 1.5
532,838 - -0.5
532,854 + 0.5
532,857 + 2.1
532,980 + -0.3
533,002 - -1.1
533,011 + 1.0
533,013 + 0.6
533,015 - 0.2
533,017 - -0.6
533,138 + -0.3
533,154 - -0.8
533,160 - 0.1
533,173 - 1.9
533,294 + -0.2
533,297 + -0.7
533,299 - 0.8
533,316 - 1.1
533,346 - -0.2
533,439 - 0.4
533,449 - -0.5
533,452 - -1.5
533,460 - -0.3
533,465 + 2.9
533,467 - 0.7
533,471 - -0.0
533,476 - 0.1
533,479 - 1.6
533,577 + -0.9
533,582 - -0.2
533,586 - 0.6
533,590 + 2.0
533,591 + 0.4
533,600 - 1.1
533,615 - 0.4
533,617 - 0.7
533,619 + -2.1
533,621 + 0.1
533,621 + -0.0
533,624 + 1.2
533,628 + 1.5
533,650 - 2.6
533,665 - -0.1
533,671 - -0.4
533,675 + -1.3
533,677 + -0.8
533,677 - -0.0
533,677 - 1.1
533,678 - -0.1
533,680 + -0.1
533,682 - 0.1
533,687 + -0.6
533,696 - -0.2
533,699 - -0.0
533,700 + 0.0
533,701 + -0.6
533,704 + -0.5
533,705 - -0.0
533,717 - -0.6
533,721 - -0.9
533,721 + 0.3
533,722 + -0.4
533,722 + -0.7
533,765 + 0.5
533,783 + -1.2
533,792 + 0.4
533,793 - 1.8
533,814 + -2.4
533,816 - -2.7
533,822 + -0.3
533,828 - 0.5
533,843 + 0.2
533,844 - -0.5
533,855 + 1.8
533,863 + -1.6
533,864 - -1.5
533,868 + -0.2
533,879 + 0.5
533,880 - 0.2
533,892 + -1.8
533,897 + 0.8
533,897 + -0.3
533,899 + -0.4
533,903 + 1.4
533,904 + -0.6
533,905 + -0.4
533,927 - 2.3
533,931 + 1.2
533,936 + -0.3
533,938 + 1.7
533,941 + 1.0
533,957 + 0.2
534,017 - 0.3
534,017 - 0.1
534,033 + 0.1
534,047 + 1.8
534,049 - 1.3
534,053 - 1.7
534,056 + 0.1
534,057 + 1.2
534,062 - 0.2
534,063 + -1.1
534,066 + 1.9
534,069 + -1.4
534,072 + 0.2
534,075 - -0.7
534,077 - 1.5
534,077 - 1.1
534,081 + 0.5
534,086 - -1.2
534,088 - 0.2
534,091 + -1.3
534,093 - 0.6
534,095 - 1.0
534,096 + 0.2
534,101 + -1.7
534,110 + -0.2