Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1904

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474303 to 478311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479057 to 480594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480800 to 481665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,198 - 0.5
478,730 - 1.0
479,113 + 0.2
479,278 + 10272 mRNA_1904 0.14 0.1
479,284 - 10272 mRNA_1904 0.15 -0.2
479,547 + 10272 mRNA_1904 0.32 0.3
479,689 + 10272 mRNA_1904 0.41 -0.5
479,861 + 10272 mRNA_1904 0.52 1.2
480,169 + 10272 mRNA_1904 0.72 1.3
480,416 + 10272 mRNA_1904 0.88 -0.2
480,691 - -0.3
480,696 + -0.6
480,706 + -0.3
480,715 + -0.7
480,723 + -0.2
480,820 + 0.6
480,831 - -0.9
480,841 + 0.4
480,841 + -0.3
480,857 + 0.8
480,905 + 10273 mRNA_1905 0.12 2.0
480,930 - 10273 mRNA_1905 0.15 -0.1
480,938 + 10273 mRNA_1905 0.16 -0.4
480,976 + 10273 mRNA_1905 0.20 0.3
480,982 - 10273 mRNA_1905 0.21 0.0
480,997 + 10273 mRNA_1905 0.23 -1.0
481,054 + 10273 mRNA_1905 0.29 0.3
481,093 + 10273 mRNA_1905 0.34 -0.7
481,106 + 10273 mRNA_1905 0.35 1.5
481,107 - 10273 mRNA_1905 0.35 0.3
481,113 + 10273 mRNA_1905 0.36 1.2
481,114 + 10273 mRNA_1905 0.36 0.5
481,129 - 10273 mRNA_1905 0.38 -0.2
481,132 + 10273 mRNA_1905 0.38 0.4
481,135 + 10273 mRNA_1905 0.39 -1.6
481,135 + 10273 mRNA_1905 0.39 -1.0
481,158 + 10273 mRNA_1905 0.41 -0.2
481,170 - 10273 mRNA_1905 0.43 -0.0
481,190 + 10273 mRNA_1905 0.45 -1.5
481,202 + 10273 mRNA_1905 0.46 -0.6
481,213 + 10273 mRNA_1905 0.48 -2.3
481,220 + 10273 mRNA_1905 0.48 -0.0
481,235 - 10273 mRNA_1905 0.50 0.3
481,236 + 10273 mRNA_1905 0.50 0.8
481,244 + 10273 mRNA_1905 0.51 1.9
481,314 - 10273 mRNA_1905 0.59 0.4
481,315 + 10273 mRNA_1905 0.59 -1.2
481,334 + 10273 mRNA_1905 0.62 0.4
481,378 - 10273 mRNA_1905 0.67 -1.5
481,384 + 10273 mRNA_1905 0.67 -0.1
481,399 - 10273 mRNA_1905 0.69 -0.9
481,403 - 10273 mRNA_1905 0.70 -0.8
481,425 - 10273 mRNA_1905 0.72 -1.4
481,432 + 10273 mRNA_1905 0.73 -1.7
481,439 + 10273 mRNA_1905 0.74 0.4
481,453 - 10273 mRNA_1905 0.75 -0.8
481,454 + 10273 mRNA_1905 0.76 -0.8
481,455 - 10273 mRNA_1905 0.76 1.0
481,458 + 10273 mRNA_1905 0.76 0.5
481,465 - 10273 mRNA_1905 0.77 -1.1
481,468 + 10273 mRNA_1905 0.77 -0.5
481,469 + 10273 mRNA_1905 0.77 0.6
481,485 + 10273 mRNA_1905 0.79 -0.5
481,489 - 10273 mRNA_1905 0.80 0.4
481,501 - 10273 mRNA_1905 0.81 -1.1
481,536 + 10273 mRNA_1905 0.85 1.1
481,549 - 10273 mRNA_1905 0.86 -1.5