Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1886

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433544 to 436141 10253 mRNA_1886: 10254 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 436589 to 438730 10254 mRNA_1887: 10255 - K14823 EBP2, EBNA1BP2 rRNA-processing protein EBP2, at 439280 to 440428 10255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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435,864 - 10253 mRNA_1885 0.89 -0.1
436,025 - 0.3
436,135 - 1.0
436,142 + -2.5
436,146 + -0.4
436,148 - -0.6
436,172 - 0.1
436,300 + 0.7
436,306 - 0.5
436,323 + 0.2
436,330 - -0.0
436,343 + -1.4
436,347 + 0.1
436,367 - 1.4
436,476 - 0.5
436,508 + 0.6
436,598 - -1.4
436,632 - 0.8
436,969 + 10254 mRNA_1886 0.18 -1.8
437,348 - 10254 mRNA_1886 0.35 0.1
438,083 + 10254 mRNA_1886 0.70 -0.3
438,085 - 10254 mRNA_1886 0.70 -1.1
438,096 - 10254 mRNA_1886 0.70 0.5
438,229 - 10254 mRNA_1886 0.77 0.6
438,391 + 10254 mRNA_1886 0.84 -1.5
438,827 + 0.3
438,853 - 0.8
438,945 - 0.6
438,971 - 1.7
439,008 + -1.5
439,029 + -0.4
439,119 - 0.8
439,129 + -0.5
439,130 - 1.0
439,140 - -0.8
439,144 - 0.1
439,159 - -0.3
439,160 - -2.8
439,164 + -0.6
439,169 + -2.3
439,184 - 1.2
439,315 + 0.2