Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1873

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1872: 10240 - K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24, at 410238 to 411340 10240 mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411554 to 414002 10241 mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414154 to 415207 10242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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411,371 - -0.2
411,373 + 0.4
411,379 + -0.2
411,390 + -0.4
411,393 + -2.1
411,401 - -0.2
411,415 + -2.6
411,452 + 1.2
411,453 + -1.2
411,572 + -0.1
411,604 + 1.0
411,764 + 1.2
411,764 + -0.5
411,858 + 10241 mRNA_1873 0.12 0.0
411,898 + 10241 mRNA_1873 0.14 0.2
412,423 + 10241 mRNA_1873 0.35 -0.0
412,648 + 10241 mRNA_1873 0.45 0.8
412,884 + 10241 mRNA_1873 0.54 -0.4
413,045 + 10241 mRNA_1873 0.61 1.2
413,058 + 10241 mRNA_1873 0.61 0.2
413,072 - 10241 mRNA_1873 0.62 -0.7
413,359 - 10241 mRNA_1873 0.74 -1.3
413,364 - 10241 mRNA_1873 0.74 0.1
413,474 + 10241 mRNA_1873 0.78 -2.3
413,481 - 10241 mRNA_1873 0.79 -0.1
413,785 + 2.6
413,929 - -1.4
413,948 + 0.9
414,068 - -1.3
414,103 + -0.3
414,108 - -0.6
414,117 + -1.1
414,124 + 0.4
414,241 - -1.3
414,249 - 0.8
414,253 + 1.6
414,256 + -0.1
414,414 + 10242 mRNA_1874 0.25 -0.1
414,524 + 10242 mRNA_1874 0.35 0.8
414,555 - 10242 mRNA_1874 0.38 -1.5
414,705 - 10242 mRNA_1874 0.52 1.1
414,834 - 10242 mRNA_1874 0.65 -1.4
414,841 + 10242 mRNA_1874 0.65 -0.4
414,977 - 10242 mRNA_1874 0.78 2.6