Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1857

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383950 to 386547 10225 mRNA_1858: 10226 - K19245 JLP1 sulfonate dioxygenase, at 387260 to 388608 10226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,428 - 10224 mRNA_1856 0.82 -1.3
383,454 - 10224 mRNA_1856 0.84 -1.1
383,459 - 10224 mRNA_1856 0.85 -0.6
383,753 - -0.4
383,946 - 0.1
384,191 + -1.5
384,504 - 10225 mRNA_1857 0.21 -0.3
384,513 + 10225 mRNA_1857 0.22 0.5
385,193 - 10225 mRNA_1857 0.48 0.9
385,344 - 10225 mRNA_1857 0.54 -1.0
385,504 + 10225 mRNA_1857 0.60 -0.6
385,608 + 10225 mRNA_1857 0.64 0.0
385,912 - 10225 mRNA_1857 0.76 0.9
386,076 - 10225 mRNA_1857 0.82 -0.3
386,196 - 10225 mRNA_1857 0.86 -0.3
386,197 + 10225 mRNA_1857 0.86 2.0
386,340 - 0.9
386,493 - -0.5
386,504 - -0.1
386,512 + -0.1
386,633 + 0.0
386,658 - 1.0
386,798 + 0.2
386,815 - 0.6
386,821 + -0.1
386,823 + 0.8
386,932 - -0.5
386,952 - -0.2
386,962 - -0.3
386,963 + 2.9
386,966 - -0.4
386,966 - 0.7
386,972 - -1.1
386,974 + 0.1
386,976 - 0.0
387,098 - -0.1
387,128 + -1.8
387,147 + 0.5
387,241 + 0.5
387,286 - -0.6
387,394 - -0.4
387,397 + 10226 mRNA_1858 0.10 -0.3
387,532 - 10226 mRNA_1858 0.20 0.4