Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1856

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383950 to 386547 10225

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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381,408 + 10223 mRNA_1855 0.38 0.6
381,436 - 10223 mRNA_1855 0.40 0.1
381,703 + 10223 mRNA_1855 0.62 0.8
381,707 + 10223 mRNA_1855 0.63 -0.8
381,710 - 10223 mRNA_1855 0.63 -0.1
381,883 + 10223 mRNA_1855 0.78 -1.0
381,909 + 10223 mRNA_1855 0.80 -0.2
382,332 + -0.7
382,440 - -2.2
382,465 - 1.0
382,478 + 10224 mRNA_1856 0.11 -0.0
382,605 + 10224 mRNA_1856 0.20 -2.6
383,428 - 10224 mRNA_1856 0.82 -1.3
383,454 - 10224 mRNA_1856 0.84 -1.1
383,459 - 10224 mRNA_1856 0.85 -0.6
383,753 - -0.4
383,946 - 0.1
384,191 + -1.5
384,504 - 10225 mRNA_1857 0.21 -0.3
384,513 + 10225 mRNA_1857 0.22 0.5