Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1851

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1850: 10218 - K00311 ETFDH electron-transferring-flavoprotein dehydrogenase, at 368575 to 371026 10218 mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371748 to 376200 10219 mRNA_1852: 10220 - K06133 LYS5, acpT 4'-phosphopantetheinyl transferase, at 376283 to 377328 10220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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370,754 - 10218 mRNA_1850 0.89 0.2
370,768 + 10218 mRNA_1850 0.89 1.3
370,915 - -1.4
370,922 - -0.2
370,923 - 0.1
371,044 - -0.8
371,045 - -0.2
371,052 + -1.3
371,052 - 0.1
371,054 + -1.1
371,060 + 0.7
371,060 - 1.0
371,063 + -0.2
371,072 - 1.0
371,073 + 0.0
371,073 - -0.6
371,076 - -0.5
371,077 + -0.8
371,080 + -0.5
371,084 + -0.0
371,089 - -0.2
371,090 + -0.3
371,097 + 1.3
371,168 - -1.4
371,219 + -1.4
371,239 + 0.3
371,253 + 0.1
371,382 + -0.9
371,382 - -1.9
371,383 - 1.7
371,392 + -0.8
371,392 + 0.2
371,394 - -0.9
371,394 - -0.4
371,518 - 0.6
371,528 + -0.6
371,648 + -1.2
371,804 - -0.2
372,134 - -0.4
372,423 + 10219 mRNA_1851 0.15 -0.6
372,722 + 10219 mRNA_1851 0.22 0.5
372,993 + 10219 mRNA_1851 0.28 -0.6
373,005 + 10219 mRNA_1851 0.28 -0.1
373,111 - 10219 mRNA_1851 0.31 0.6
373,428 + 10219 mRNA_1851 0.38 1.2
374,097 - 10219 mRNA_1851 0.53 -2.3
374,135 - 10219 mRNA_1851 0.54 0.9
374,415 + 10219 mRNA_1851 0.60 0.7
374,416 - 10219 mRNA_1851 0.60 -1.7
374,427 - 10219 mRNA_1851 0.60 -1.4
374,444 - 10219 mRNA_1851 0.61 1.7
374,610 + 10219 mRNA_1851 0.64 -0.4
375,303 + 10219 mRNA_1851 0.80 0.3
375,659 + 10219 mRNA_1851 0.88 -0.6
376,266 + 1.5