Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1848

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216 mRNA_1849: 10217 - Hypothetical Protein, at 365239 to 367490 10217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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362,009 - 10215 mRNA_1847 0.85 -0.7
362,329 + -1.4
362,352 - 2.4
362,382 - 1.0
362,404 - -0.7
362,488 - 2.7
362,489 - 0.5
362,509 - -1.6
362,516 + -2.5
362,518 - -0.4
362,519 - 0.3
362,527 + -0.3
362,538 - 0.6
362,541 + 0.5
362,545 + 0.4
362,545 + 0.4
362,555 + 1.3
362,557 + -0.7
362,559 + -0.7
362,560 - -0.8
362,564 - 1.9
362,567 - -0.3
362,571 - 0.3
362,571 + 0.1
362,584 - -0.1
362,589 + -0.5
362,605 - -0.7
362,628 - 0.6
362,639 - 0.9
362,640 + 1.7
362,641 + -0.3
362,643 + 0.8
362,644 + 0.2
362,647 - 0.9
362,676 - 1.0
362,676 + 2.3
362,689 - 1.4
362,692 + -0.3
362,693 + 0.6
362,698 - -0.3
362,698 - 1.1
362,702 - 0.7
362,708 + 1.2
362,717 - -0.7
362,717 + 0.2
362,721 - 1.0
362,726 - -0.9
362,731 - 0.9
362,732 + 0.3
362,735 - 0.5
362,750 + 0.5
362,751 + 0.0
362,752 + -1.9
362,753 + 0.7
362,753 + -0.2
362,758 - -0.6
362,764 - -0.2
362,766 - -1.9
362,775 + -2.5
362,775 - 1.5
362,776 + -0.3
362,778 + 1.5
362,789 + 0.6
362,797 - -0.8
362,801 + 0.1
362,803 + 1.5
362,812 + -0.5
362,813 + 1.7
362,911 + -0.0
362,912 - -1.1
362,945 - -0.4
362,949 - -0.7
363,058 + 1.0
363,086 - 0.3
363,093 + 1.5
363,097 - -3.0
363,230 - 10216 mRNA_1848 0.14 0.6
363,257 + 10216 mRNA_1848 0.15 -0.3
363,374 + 10216 mRNA_1848 0.21 0.5
363,587 - 10216 mRNA_1848 0.31 1.6
363,802 + 10216 mRNA_1848 0.42 -0.0
363,960 - 10216 mRNA_1848 0.50 -2.4
364,241 - 10216 mRNA_1848 0.63 -0.1
364,403 - 10216 mRNA_1848 0.71 0.7
364,535 + 10216 mRNA_1848 0.78 -1.9
364,576 + 10216 mRNA_1848 0.80 0.8
364,707 + 10216 mRNA_1848 0.86 0.0
364,868 - -2.1
364,878 + -0.7
365,167 + -1.4
365,610 + 10217 mRNA_1849 0.16 1.0
365,819 - 10217 mRNA_1849 0.26 -2.1
365,855 + 10217 mRNA_1849 0.27 0.6